Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SCARNA15.1-201ENST00000516384 125 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 IGHV3-32-201ENST00000519182 355 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC109635.6-201ENST00000525487 1113 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC005832.3-201ENST00000537929 631 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 GTF2IP22-201ENST00000554443 182 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 MIR4737-201ENST00000583979 81 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AC012065.4-201ENST00000602445 679 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AP005137.2-201ENST00000609238 400 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC064836.2-201ENST00000609491 462 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC244107.2-201ENST00000611773 76 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AC091304.9-201ENST00000612091 226 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AP003400.3-201ENST00000624904 346 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC5.21□□□□□ -1.58
USP39Q53GS9 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.21□□□□□ -1.58
USP39Q53GS9 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
USP39Q53GS9 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
USP39Q53GS9 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
USP39Q53GS9 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
USP39Q53GS9 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.21□□□□□ -1.58
USP39Q53GS9 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC5.21□□□□□ -1.58
USP39Q53GS9 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL079343.1-201ENST00000572358 1771 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
USP39Q53GS9 RNU6-621P-201ENST00000364752 109 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 SNORA48.4-201ENST00000391089 134 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 RPS16P5-201ENST00000406501 404 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC093084.1-201ENST00000424233 687 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 TMX2P1-201ENST00000436507 708 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC092427.1-201ENST00000439177 601 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC011753.3-201ENST00000443436 406 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL035551.1-201ENST00000446931 348 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC005002.1-201ENST00000447458 540 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC098824.1-201ENST00000453565 980 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
USP39Q53GS9 MTND1P11-201ENST00000456661 876 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 RPL5P24-201ENST00000463742 885 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AP000852.1-201ENST00000472460 573 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 RN7SL809P-201ENST00000482040 297 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL358832.1-201ENST00000497800 389 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC091951.2-201ENST00000500762 203 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC008628.2-201ENST00000502605 298 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 ATP1B1P1-201ENST00000509767 915 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 COX6B1P5-201ENST00000509843 249 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 IMPA1P1-201ENST00000510718 842 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC098976.1-201ENST00000513014 541 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 snoU109.6-201ENST00000516831 118 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
USP39Q53GS9 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL138976.2-201ENST00000563989 694 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 ATP5F1P7-201ENST00000567330 760 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC019322.1-201ENST00000571869 389 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 AL390208.1-201ENST00000605885 644 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC104458.1-201ENST00000608243 463 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 RPL23AP61-201ENST00000623642 466 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 AC011815.3-201ENST00000624194 473 ntBASIC5.2□□□□□ -1.58
USP39Q53GS9 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.2□□□□□ -1.58
USP39Q53GS9 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.2□□□□□ -1.58
USP39Q53GS9 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.2□□□□□ -1.58
USP39Q53GS9 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
USP39Q53GS9 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 114.1 ms