Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC063943.1-201ENST00000465434 453 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC090686.1-201ENST00000481577 749 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC013828.1-201ENST00000481845 158 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC068724.1-201ENST00000487100 792 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC007686.1-201ENST00000488511 463 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 HMGB3P16-201ENST00000508037 287 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP392-201ENST00000516905 112 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 Y_RNA.719-201ENST00000517156 106 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC008802.1-201ENST00000519121 791 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC239860.2-201ENST00000525886 270 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 BNIP3P1-201ENST00000547295 580 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 HYKK-203ENST00000563233 734 ntTSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC083899.3-201ENST00000603413 594 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 RNU6-88P-201ENST00000606801 100 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC009878.1-201ENST00000621819 340 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AL359715.5-201ENST00000623431 443 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC090582.1-201ENST00000636321 199 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AL079343.1-201ENST00000572358 1771 ntBASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.75□□□□□ -1.65
PTCHD3Q3KNS1 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 MTND5P24-201ENST00000438892 1767 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 ATP8A2P3-201ENST00000426792 1536 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 CYB5AP4-201ENST00000396692 399 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP345-201ENST00000410646 108 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 PRELID3BP11-201ENST00000414230 479 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL031779.1-201ENST00000415663 330 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 OR6C64P-201ENST00000419708 825 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 OR2AH1P-201ENST00000425717 928 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 FABP7P2-201ENST00000429946 379 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 DLGAP5P1-201ENST00000430307 464 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 USP9YP28-201ENST00000435142 589 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 UBE2FP3-201ENST00000436366 524 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 RPL7P11-201ENST00000437586 658 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 KATNBL1P6-201ENST00000453433 915 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC090013.1-201ENST00000485147 480 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC006499.5-201ENST00000505037 514 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 RNA5SP216-201ENST00000516111 123 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AP000790.1-201ENST00000528891 737 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 OR5M2P-201ENST00000529003 936 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 OR4A12P-201ENST00000530847 918 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AP000873.5-201ENST00000533906 236 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 RSL24D1P11-201ENST00000591045 491 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC104785.1-201ENST00000603220 588 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC010424.2-201ENST00000607594 443 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL353600.1-201ENST00000608148 251 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AP001521.1-201ENST00000609150 300 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC012360.2-201ENST00000609349 391 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL022401.1-201ENST00000619498 108 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AL392088.2-201ENST00000637607 285 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 AC099654.2-201ENST00000433031 1980 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 BTBD10P1-201ENST00000549824 1352 ntBASIC4.74□□□□□ -1.65
PTCHD3Q3KNS1 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms