Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIM2P55344 AC007390.2-201ENST00000606229 3803 ntBASIC3.64□□□□□ -1.83
LIM2P55344 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIM2P55344 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIM2P55344 MTCO1P6-201ENST00000481192 1384 ntBASIC3.63□□□□□ -1.83
LIM2P55344 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.63□□□□□ -1.83
LIM2P55344 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.63□□□□□ -1.83
LIM2P55344 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 ASNSP1-204ENST00000641977 1664 ntBASIC3.63□□□□□ -1.83
LIM2P55344 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
LIM2P55344 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
LIM2P55344 SNORA63.3-201ENST00000362682 132 ntBASIC3.63□□□□□ -1.83
LIM2P55344 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
LIM2P55344 U1.1-201ENST00000384101 164 ntBASIC3.63□□□□□ -1.83
LIM2P55344 SNORA57.1-201ENST00000391227 145 ntBASIC3.63□□□□□ -1.83
LIM2P55344 ZNF602P-201ENST00000405929 924 ntBASIC3.63□□□□□ -1.83
LIM2P55344 ATF1P1-201ENST00000406040 927 ntBASIC3.63□□□□□ -1.83
LIM2P55344 MIR1303-201ENST00000408625 86 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC3.63□□□□□ -1.83
LIM2P55344 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 RPL30P3-201ENST00000424262 333 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 RPS29P7-201ENST00000439662 171 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AC009263.1-201ENST00000441193 1239 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.63□□□□□ -1.83
LIM2P55344 RN7SL93P-201ENST00000463035 293 ntBASIC3.63□□□□□ -1.83
LIM2P55344 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
LIM2P55344 RWDD4P1-201ENST00000488019 565 ntBASIC3.63□□□□□ -1.83
LIM2P55344 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 PPM1AP1-201ENST00000502740 1135 ntBASIC3.63□□□□□ -1.83
LIM2P55344 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC3.63□□□□□ -1.83
LIM2P55344 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 AC107463.1-203ENST00000509713 284 ntTSL 5 BASIC3.63□□□□□ -1.83
LIM2P55344 AC104108.1-201ENST00000509930 412 ntBASIC3.63□□□□□ -1.83
LIM2P55344 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.63□□□□□ -1.83
LIM2P55344 HMGN1P15-201ENST00000513870 295 ntBASIC3.63□□□□□ -1.83
LIM2P55344 RNU6-334P-201ENST00000517072 102 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC3.63□□□□□ -1.83
LIM2P55344 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.63□□□□□ -1.83
LIM2P55344 NARSP2-201ENST00000518524 679 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC3.63□□□□□ -1.83
LIM2P55344 AC099676.1-201ENST00000608886 657 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AC018926.1-201ENST00000616335 435 ntBASIC3.63□□□□□ -1.83
LIM2P55344 AC092608.3-201ENST00000625017 386 ntBASIC3.63□□□□□ -1.83
LIM2P55344 CFTRP2-201ENST00000634304 199 ntBASIC3.63□□□□□ -1.83
LIM2P55344 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.63□□□□□ -1.83
LIM2P55344 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIM2P55344 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.62□□□□□ -1.83
LIM2P55344 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.62□□□□□ -1.83
LIM2P55344 Z73965.1-201ENST00000623412 2297 ntBASIC3.62□□□□□ -1.83
LIM2P55344 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.62□□□□□ -1.83
LIM2P55344 AL512646.1-201ENST00000269395 1077 ntBASIC3.62□□□□□ -1.83
LIM2P55344 RNU1-18P-201ENST00000363062 164 ntBASIC3.62□□□□□ -1.83
LIM2P55344 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 RNU6-468P-201ENST00000384003 109 ntBASIC3.62□□□□□ -1.83
LIM2P55344 RNU6-481P-201ENST00000384194 107 ntBASIC3.62□□□□□ -1.83
LIM2P55344 ATP5F1P4-201ENST00000397288 746 ntBASIC3.62□□□□□ -1.83
LIM2P55344 MTATP6P31-201ENST00000406985 692 ntBASIC3.62□□□□□ -1.83
LIM2P55344 SNORA3.3-201ENST00000408712 125 ntBASIC3.62□□□□□ -1.83
LIM2P55344 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 MTND2P15-201ENST00000418575 892 ntBASIC3.62□□□□□ -1.83
LIM2P55344 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.62□□□□□ -1.83
LIM2P55344 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.62□□□□□ -1.83
LIM2P55344 RPL7P2-201ENST00000427639 268 ntBASIC3.62□□□□□ -1.83
LIM2P55344 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.62□□□□□ -1.83
LIM2P55344 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.62□□□□□ -1.83
LIM2P55344 AL096829.2-201ENST00000446582 742 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 AL121877.1-201ENST00000453704 622 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.62□□□□□ -1.83
LIM2P55344 RN7SL132P-201ENST00000478131 296 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.62□□□□□ -1.83
LIM2P55344 RPL30P11-201ENST00000495304 339 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AL139099.1-201ENST00000497398 403 ntBASIC3.62□□□□□ -1.83
LIM2P55344 FTH1P24-201ENST00000503502 462 ntBASIC3.62□□□□□ -1.83
LIM2P55344 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.62□□□□□ -1.83
LIM2P55344 AC008494.2-201ENST00000514544 370 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC3.62□□□□□ -1.83
LIM2P55344 RN7SKP82-201ENST00000516786 223 ntBASIC3.62□□□□□ -1.83
LIM2P55344 RN7SKP283-201ENST00000517197 270 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AC022695.1-201ENST00000522089 237 ntBASIC3.62□□□□□ -1.83
LIM2P55344 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIM2P55344 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.62□□□□□ -1.83
LIM2P55344 CYCSP30-201ENST00000546447 172 ntBASIC3.62□□□□□ -1.83
LIM2P55344 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC3.62□□□□□ -1.83
LIM2P55344 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC3.62□□□□□ -1.83
LIM2P55344 OR4U1P-201ENST00000554958 912 ntBASIC3.62□□□□□ -1.83
LIM2P55344 HMGB3P26-201ENST00000560051 582 ntBASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms