Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MTHFD2P2-201ENST00000407725 247 ntBASIC4.79□□□□□ -1.64
MSH6P52701 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.79□□□□□ -1.64
MSH6P52701 BTG3P1-201ENST00000435859 716 ntBASIC4.79□□□□□ -1.64
MSH6P52701 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH6P52701 RPL7P59-201ENST00000447700 943 ntBASIC4.79□□□□□ -1.64
MSH6P52701 AC023598.1-201ENST00000472521 361 ntBASIC4.79□□□□□ -1.64
MSH6P52701 AC004924.1-201ENST00000480160 781 ntBASIC4.79□□□□□ -1.64
MSH6P52701 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH6P52701 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH6P52701 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC4.79□□□□□ -1.64
MSH6P52701 AC234775.3-201ENST00000564612 656 ntBASIC4.79□□□□□ -1.64
MSH6P52701 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH6P52701 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH6P52701 AC136601.2-201ENST00000604356 474 ntBASIC4.79□□□□□ -1.64
MSH6P52701 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC4.79□□□□□ -1.64
MSH6P52701 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH6P52701 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
MSH6P52701 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.79□□□□□ -1.64
MSH6P52701 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH6P52701 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH6P52701 RNA5-8SP4-201ENST00000365096 150 ntBASIC4.78□□□□□ -1.64
MSH6P52701 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 AC017079.2-201ENST00000416102 485 ntBASIC4.78□□□□□ -1.64
MSH6P52701 SETP10-201ENST00000424368 814 ntBASIC4.78□□□□□ -1.64
MSH6P52701 YWHAEP5-201ENST00000431545 765 ntBASIC4.78□□□□□ -1.64
MSH6P52701 BLNK-209ENST00000495266 440 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH6P52701 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 RNU6-579P-201ENST00000516879 102 ntBASIC4.78□□□□□ -1.64
MSH6P52701 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH6P52701 KCTD9P6-201ENST00000522306 950 ntBASIC4.78□□□□□ -1.64
MSH6P52701 CLEC7A-212ENST00000533022 625 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 IGHV3-29-201ENST00000604817 344 ntBASIC4.78□□□□□ -1.64
MSH6P52701 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH6P52701 RMST_9.1-201ENST00000619945 193 ntBASIC4.78□□□□□ -1.64
MSH6P52701 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
MSH6P52701 ZC3H14-206ENST00000406216 1341 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.78□□□□□ -1.64
MSH6P52701 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 OR2L3-203ENST00000641649 2846 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
MSH6P52701 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 LINC02471-203ENST00000641941 4752 ntBASIC4.78□□□□□ -1.64
MSH6P52701 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH6P52701 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH6P52701 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH6P52701 AC063979.1-201ENST00000415539 377 ntBASIC4.78□□□□□ -1.64
MSH6P52701 OOSP1P1-201ENST00000423265 274 ntBASIC4.78□□□□□ -1.64
MSH6P52701 RPS29P31-201ENST00000446147 164 ntBASIC4.78□□□□□ -1.64
MSH6P52701 AC005002.1-201ENST00000447458 540 ntBASIC4.78□□□□□ -1.64
MSH6P52701 AC140076.1-201ENST00000449897 361 ntBASIC4.78□□□□□ -1.64
MSH6P52701 HMGB1P5-202ENST00000451497 985 ntBASIC4.78□□□□□ -1.64
MSH6P52701 Z84488.1-201ENST00000476099 530 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH6P52701 AC069499.1-201ENST00000489433 509 ntBASIC4.78□□□□□ -1.64
MSH6P52701 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH6P52701 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH6P52701 AC135001.1-201ENST00000544546 283 ntBASIC4.78□□□□□ -1.64
MSH6P52701 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 AL136298.1-202ENST00000556520 518 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH6P52701 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH6P52701 AC073657.2-201ENST00000605661 303 ntBASIC4.78□□□□□ -1.64
MSH6P52701 AL137790.1-201ENST00000634283 177 ntBASIC4.78□□□□□ -1.64
MSH6P52701 AC127502.3-201ENST00000636170 1206 ntBASIC4.78□□□□□ -1.64
MSH6P52701 HSPA8P17-201ENST00000427029 1382 ntBASIC4.77□□□□□ -1.65
MSH6P52701 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH6P52701 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.77□□□□□ -1.65
MSH6P52701 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH6P52701 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH6P52701 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH6P52701 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH6P52701 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
MSH6P52701 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH6P52701 SAGE2P-201ENST00000420011 2126 ntBASIC4.77□□□□□ -1.65
MSH6P52701 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
MSH6P52701 SNORA48.8-201ENST00000391324 134 ntBASIC4.77□□□□□ -1.65
MSH6P52701 AL121578.1-201ENST00000428051 892 ntBASIC4.77□□□□□ -1.65
MSH6P52701 RPL32P28-201ENST00000443577 397 ntBASIC4.77□□□□□ -1.65
MSH6P52701 RPL7P38-201ENST00000488396 739 ntBASIC4.77□□□□□ -1.65
MSH6P52701 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.77□□□□□ -1.65
MSH6P52701 OR2A20P-203ENST00000498397 1268 ntBASIC4.77□□□□□ -1.65
MSH6P52701 AC018442.3-201ENST00000523025 183 ntBASIC4.77□□□□□ -1.65
MSH6P52701 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC4.77□□□□□ -1.65
MSH6P52701 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH6P52701 ADAM3B-201ENST00000569937 840 ntBASIC4.77□□□□□ -1.65
MSH6P52701 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH6P52701 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH6P52701 AC006557.5-201ENST00000603126 811 ntBASIC4.77□□□□□ -1.65
MSH6P52701 ATP5A1P2-202ENST00000616464 443 ntBASIC4.77□□□□□ -1.65
MSH6P52701 ZNF93-209ENST00000638737 1020 ntTSL 5 BASIC4.77□□□□□ -1.65
MSH6P52701 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
MSH6P52701 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
MSH6P52701 DDX6P1-205ENST00000441966 1436 ntBASIC4.76□□□□□ -1.65
MSH6P52701 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
MSH6P52701 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms