Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.07□□□□□ -1.76
COL5A3P25940 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.07□□□□□ -1.76
COL5A3P25940 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
COL5A3P25940 RNU6-7-201ENST00000364784 107 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 RNU6-8-201ENST00000365467 107 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC4.07□□□□□ -1.76
COL5A3P25940 RN7SL93P-201ENST00000463035 293 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 RPL23AP73-201ENST00000492507 471 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC4.07□□□□□ -1.76
COL5A3P25940 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.07□□□□□ -1.76
COL5A3P25940 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC4.07□□□□□ -1.76
COL5A3P25940 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.07□□□□□ -1.76
COL5A3P25940 AL122125.1-201ENST00000616999 600 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 AC099654.11-201ENST00000638857 294 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL5A3P25940 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL5A3P25940 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
COL5A3P25940 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
COL5A3P25940 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL5A3P25940 AC008264.1-201ENST00000447612 367 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL5A3P25940 ACTG1P13-201ENST00000486987 1043 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 AC022080.3-201ENST00000544433 482 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.07□□□□□ -1.76
COL5A3P25940 GTF3AP2-201ENST00000557014 266 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC4.07□□□□□ -1.76
COL5A3P25940 AC016590.3-201ENST00000611171 753 ntBASIC4.07□□□□□ -1.76
COL5A3P25940 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC4.07□□□□□ -1.76
COL5A3P25940 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL5A3P25940 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.06□□□□□ -1.76
COL5A3P25940 CR381670.1-201ENST00000624291 1693 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL5A3P25940 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.06□□□□□ -1.76
COL5A3P25940 AC018555.1-201ENST00000567548 1980 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
COL5A3P25940 SNORA5B-201ENST00000363786 132 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 RNA5SP39-201ENST00000411245 120 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 AC126124.2-201ENST00000413542 321 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 AC005002.1-201ENST00000447458 540 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 HMGB1P5-202ENST00000451497 985 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 OR2A20P-203ENST00000498397 1268 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC4.06□□□□□ -1.76
COL5A3P25940 MIR3162-201ENST00000581818 82 ntBASIC4.06□□□□□ -1.76
COL5A3P25940 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.06□□□□□ -1.76
COL5A3P25940 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC4.06□□□□□ -1.76
COL5A3P25940 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC4.05□□□□□ -1.76
COL5A3P25940 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 ZRANB2-201ENST00000254821 2821 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC4.05□□□□□ -1.76
COL5A3P25940 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 RPS4XP13-201ENST00000483219 789 ntBASIC4.05□□□□□ -1.76
COL5A3P25940 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A3P25940 LYZ-203ENST00000549690 669 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A3P25940 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A3P25940 HNRNPDLP4-201ENST00000605144 301 ntBASIC4.05□□□□□ -1.76
COL5A3P25940 AL450472.3-201ENST00000615578 367 ntBASIC4.05□□□□□ -1.76
COL5A3P25940 AL713922.2-201ENST00000619384 716 ntBASIC4.05□□□□□ -1.76
COL5A3P25940 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A3P25940 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC4.05□□□□□ -1.76
COL5A3P25940 NCAPGP1-201ENST00000505112 1814 ntBASIC4.05□□□□□ -1.76
COL5A3P25940 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC4.05□□□□□ -1.76
COL5A3P25940 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
COL5A3P25940 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A3P25940 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A3P25940 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A3P25940 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC4.04□□□□□ -1.76
COL5A3P25940 SNORA48.8-201ENST00000391324 134 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A3P25940 AL356968.1-201ENST00000416622 474 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AL359634.1-201ENST00000429807 1179 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 AC011242.1-201ENST00000433596 1158 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 RPL7P28-201ENST00000437739 740 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 RPL37P4-201ENST00000448908 268 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A3P25940 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A3P25940 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.04□□□□□ -1.76
COL5A3P25940 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 AC135001.1-201ENST00000544546 283 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.04□□□□□ -1.76
COL5A3P25940 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.04□□□□□ -1.76
COL5A3P25940 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.04□□□□□ -1.76
COL5A3P25940 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A3P25940 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC4.04□□□□□ -1.76
COL5A3P25940 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A3P25940 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
COL5A3P25940 NACA3P-201ENST00000359690 648 ntBASIC4.04□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms