Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim47Q8C0E3 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Trim47Q8C0E3 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Gm18669-201ENSMUST00000216049 778 ntBASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Trim47Q8C0E3 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Mthfsl-204ENSMUST00000186863 725 ntTSL 2 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.24■□□□□ 0.51
Trim47Q8C0E3 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Trim47Q8C0E3 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Gm10052-201ENSMUST00000168019 960 ntBASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Gm7729-201ENSMUST00000050143 801 ntBASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Trim47Q8C0E3 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Rasl2-9-201ENSMUST00000147835 1013 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Gm44430-201ENSMUST00000203376 995 ntBASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Trim47Q8C0E3 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Trim47Q8C0E3 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 25.3 ms