Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
Sox3P53784 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Sox3P53784 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Sox3P53784 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC15.76■□□□□ 0.11
Sox3P53784 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Sox3P53784 Mir770-201ENSMUST00000103252 94 ntBASIC15.76■□□□□ 0.11
Sox3P53784 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
Sox3P53784 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
Sox3P53784 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Sox3P53784 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC15.76■□□□□ 0.11
Sox3P53784 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Sox3P53784 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Sox3P53784 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC15.75■□□□□ 0.11
Sox3P53784 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
Sox3P53784 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC15.75■□□□□ 0.11
Sox3P53784 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC15.75■□□□□ 0.11
Sox3P53784 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Sox3P53784 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC15.75■□□□□ 0.11
Sox3P53784 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Sox3P53784 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 AC108858.1-201ENSMUST00000228461 1498 ntBASIC15.74■□□□□ 0.11
Sox3P53784 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
Sox3P53784 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC15.74■□□□□ 0.11
Sox3P53784 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.74■□□□□ 0.11
Sox3P53784 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC15.74■□□□□ 0.11
Sox3P53784 Gm18195-201ENSMUST00000207604 706 ntBASIC15.74■□□□□ 0.11
Sox3P53784 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC15.74■□□□□ 0.11
Sox3P53784 Il3ra-202ENSMUST00000223589 738 ntBASIC15.74■□□□□ 0.11
Sox3P53784 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC15.74■□□□□ 0.11
Sox3P53784 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
Sox3P53784 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Sox3P53784 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC15.73■□□□□ 0.11
Sox3P53784 Shroom3-201ENSMUST00000113051 6435 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Mettl21a-201ENSMUST00000053469 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC15.73■□□□□ 0.11
Sox3P53784 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Sox3P53784 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sox3P53784 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sox3P53784 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Sox3P53784 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms