Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 MIR4489-201ENST00000578869 62 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 MIR3682-201ENST00000581338 84 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC072046.2-201ENST00000618366 268 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AC074101.1-201ENST00000637861 241 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 PCAT14-202ENST00000627127 3935 ntBASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
TRIM39Q9HCM9 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC130650.2-201ENST00000618736 2403 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AL592148.3-201ENST00000608771 2646 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 MIR133B-201ENST00000362210 119 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 RNU6-297P-201ENST00000384636 107 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AL133388.1-201ENST00000404509 287 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 RAD23BP1-201ENST00000421404 1227 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 MTND4LP11-201ENST00000422184 280 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 RPL7L1P9-201ENST00000431298 745 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AL022238.1-201ENST00000442557 355 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 RPL7P36-201ENST00000444633 681 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 BX322784.1-201ENST00000455793 1077 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 ACTR3P3-201ENST00000480448 893 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC110792.2-201ENST00000510278 224 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC091912.1-201ENST00000511351 248 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC134698.4-201ENST00000523451 826 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 HMGB1P40-201ENST00000525121 540 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 MTCYBP41-201ENST00000528913 1123 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC126177.5-201ENST00000549599 178 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AL162311.1-201ENST00000553046 601 ntTSL 3 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC005341.1-201ENST00000571086 708 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AC007684.1-201ENST00000609671 477 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 MIR6826-201ENST00000617808 98 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 AL122126.1-201ENST00000546905 1318 ntBASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 CPB2-202ENST00000439329 1655 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
TRIM39Q9HCM9 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RNA5SP183-201ENST00000362452 119 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RN7SKP185-201ENST00000362813 326 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 SNORD56.6-201ENST00000384569 71 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 MIR1286-201ENST00000408112 78 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RPS3AP3-201ENST00000411933 242 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RPL12P34-201ENST00000424532 479 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 AL136231.1-201ENST00000429407 730 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 MRPS10P2-201ENST00000431226 381 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 AC138761.5-201ENST00000433967 325 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RPL22P17-201ENST00000438729 315 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 AL031667.1-201ENST00000440222 725 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RABEPKP1-201ENST00000440529 1026 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 RPS11P7-201ENST00000442125 465 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 AC002381.1-201ENST00000447049 280 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 GAPDHP25-201ENST00000447061 1001 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 NANOGNBP1-201ENST00000448444 480 ntBASIC5.35□□□□□ -1.55
TRIM39Q9HCM9 AC093392.2-201ENST00000450682 337 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120.2 ms