Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 MIR5004-201ENST00000579078 107 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MTCO3P22-201ENST00000603219 784 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 PNPT1P2-201ENST00000456768 2050 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 CR381670.1-201ENST00000624291 1693 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC096576.1-201ENST00000489014 359 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL035404.1-201ENST00000497982 568 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 SNORA70.17-201ENST00000516449 133 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC008802.1-201ENST00000519121 791 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 HIGD1AP18-201ENST00000520730 278 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MIR4524B-201ENST00000581569 115 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC124312.4-201ENST00000605533 310 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL031985.3-201ENST00000565390 2449 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RAD1P1-201ENST00000231383 813 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MIR887-201ENST00000401258 79 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RPS29P4-201ENST00000414733 161 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RPL7P44-201ENST00000424827 742 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 RPL7P23-201ENST00000493874 747 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC006539.2-201ENST00000601729 572 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 MTND2P11-201ENST00000423638 648 ntBASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC1.08□□□□□ -2.24
SYNE1Q8NF91 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 MIR199A2-201ENST00000385289 110 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RPL5P18-201ENST00000406671 891 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RNU2-22P-201ENST00000411266 212 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 HMGB1P16-201ENST00000447155 540 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RPS3AP46-201ENST00000448352 682 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RSL24D1P3-201ENST00000449255 495 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 EIF5A2P1-201ENST00000564027 460 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 MRPS35P3-201ENST00000603189 709 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 OFD1P6Y-202ENST00000451061 2724 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 HSPD1P11-201ENST00000508643 1702 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 TMEM161BP1-201ENST00000457388 1457 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RNU1-15P-201ENST00000353977 144 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 SNORA44-201ENST00000384584 132 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RN7SKP222-201ENST00000410651 315 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RNA5SP247-201ENST00000411181 105 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 COTL1P1-201ENST00000422309 375 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 SETP10-201ENST00000424368 814 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 IGKV1OR9-2-201ENST00000431378 277 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC010374.2-201ENST00000512933 535 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC009464.1-201ENST00000615731 469 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 U4.6-201ENST00000621618 127 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC243312.2-201ENST00000623340 601 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 OR51A6P-201ENST00000418680 1004 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AL353705.1-201ENST00000433468 480 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 SETD6P1-201ENST00000444575 317 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 RPL21P13-201ENST00000488305 481 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 APAF1-207ENST00000547743 651 ntTSL 3 BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AP003392.5-201ENST00000607857 415 ntBASIC1.07□□□□□ -2.24
SYNE1Q8NF91 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC1.07□□□□□ -2.24
SYNE1Q8NF91 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms