Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC068135.1-201ENST00000446164 246 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 AL035407.2-201ENST00000454090 378 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC005798.1-201ENST00000513715 387 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 HMGN1P15-201ENST00000513870 295 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 RNA5SP309-201ENST00000516670 106 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 HMGB1P23-201ENST00000518743 568 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 PARP1P2-201ENST00000556806 195 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 CSNK1A1P1-202ENST00000563423 981 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC090751.1-201ENST00000566966 267 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 MIR4512-201ENST00000583257 77 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 PCNAP1-202ENST00000595299 752 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 MTATP6P2-201ENST00000603319 678 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC104662.1-201ENST00000604448 511 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AL591034.3-201ENST00000605511 685 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC112503.2-201ENST00000609005 552 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC023043.4-201ENST00000612081 449 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 FRG1HP-204ENST00000617940 757 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AL713922.2-201ENST00000619384 716 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 MIR492-201ENST00000638676 116 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC132825.7-201ENST00000638744 335 ntBASIC3.56□□□□□ -1.84
SKA3Q8IX90 OR4A15-202ENST00000641526 945 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SKA3Q8IX90 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.56□□□□□ -1.84
SKA3Q8IX90 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SKA3Q8IX90 AC100871.1-201ENST00000507871 1456 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 TNPO1P3-201ENST00000436471 2662 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 OR8G2P-201ENST00000412796 908 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 TPT1P2-201ENST00000413105 503 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL356095.1-201ENST00000417217 199 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 OR5BE1P-201ENST00000425977 939 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 RSL24D1P6-201ENST00000426934 401 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 VDAC1P6-201ENST00000430062 855 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 USP9YP7-201ENST00000436723 430 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 USP9YP32-201ENST00000452432 430 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL136097.1-201ENST00000456945 913 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 RPS7P7-201ENST00000463499 571 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC008379.1-201ENST00000463655 464 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 RN7SL385P-201ENST00000468873 276 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC010683.1-201ENST00000473673 378 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC008565.1-201ENST00000509046 885 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC021146.1-201ENST00000511202 716 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC083923.1-201ENST00000523708 376 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AP003717.3-201ENST00000544832 1180 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 ATP5F1P7-201ENST00000567330 760 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC083899.3-201ENST00000603413 594 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC010857.1-201ENST00000606398 594 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AP005229.2-201ENST00000609980 697 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 MIR6867-201ENST00000610636 67 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
SKA3Q8IX90 AC253576.2-201ENST00000618815 580 ntBASIC3.55□□□□□ -1.84
SKA3Q8IX90 MIR6810-201ENST00000622701 70 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms