Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AK6P1-201ENST00000540219 478 ntBASIC5.02□□□□□ -1.61
MSX2P35548 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
MSX2P35548 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 MIR3936-201ENST00000584304 110 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.02□□□□□ -1.61
MSX2P35548 BNIP3P8-201ENST00000597863 560 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 SNHG8-202ENST00000602483 309 ntTSL 3 BASIC5.02□□□□□ -1.61
MSX2P35548 AC025449.1-201ENST00000603896 529 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC115286.1-201ENST00000604298 434 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC087045.1-201ENST00000605856 382 ntBASIC5.02□□□□□ -1.61
MSX2P35548 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 AP001437.1-201ENST00000608783 456 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 MIR6862-1-201ENST00000613016 70 ntBASIC5.02□□□□□ -1.61
MSX2P35548 MIR6862-2-201ENST00000614755 70 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AC243756.2-201ENST00000618406 463 ntBASIC5.02□□□□□ -1.61
MSX2P35548 AL139089.1-201ENST00000620372 975 ntBASIC5.02□□□□□ -1.61
MSX2P35548 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 AL359697.1-201ENST00000624879 587 ntBASIC5.02□□□□□ -1.61
MSX2P35548 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
MSX2P35548 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.02□□□□□ -1.61
MSX2P35548 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX2P35548 GDI2P1-201ENST00000429312 1336 ntBASIC5.01□□□□□ -1.61
MSX2P35548 DCAF13P1-201ENST00000495256 1330 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC126323.6-202ENST00000568092 3511 ntBASIC5.01□□□□□ -1.61
MSX2P35548 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSX2P35548 DBF4P1-201ENST00000412976 1892 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC046144.1-201ENST00000478559 1853 ntBASIC5.01□□□□□ -1.61
MSX2P35548 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX2P35548 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX2P35548 RNU6-462P-201ENST00000362659 105 ntBASIC5.01□□□□□ -1.61
MSX2P35548 CUBN-201ENST00000377823 705 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX2P35548 Y_RNA.402-201ENST00000383972 102 ntBASIC5.01□□□□□ -1.61
MSX2P35548 MIR551A-201ENST00000385042 96 ntBASIC5.01□□□□□ -1.61
MSX2P35548 MIR589-201ENST00000385238 99 ntBASIC5.01□□□□□ -1.61
MSX2P35548 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
MSX2P35548 TMSB4XP8-201ENST00000402089 135 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AL450338.1-201ENST00000407987 512 ntBASIC5.01□□□□□ -1.61
MSX2P35548 TMSB4XP6-201ENST00000415187 135 ntBASIC5.01□□□□□ -1.61
MSX2P35548 TMSB4XP1-201ENST00000424567 135 ntBASIC5.01□□□□□ -1.61
MSX2P35548 BMS1P19-201ENST00000433925 393 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX2P35548 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
MSX2P35548 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.01□□□□□ -1.61
MSX2P35548 AC108463.1-201ENST00000450258 347 ntBASIC5.01□□□□□ -1.61
MSX2P35548 OFD1P4Y-201ENST00000455273 1179 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC094085.1-201ENST00000468914 584 ntBASIC5.01□□□□□ -1.61
MSX2P35548 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX2P35548 AC013828.1-201ENST00000481845 158 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC022133.1-201ENST00000490961 571 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC079382.1-201ENST00000493346 557 ntBASIC5.01□□□□□ -1.61
MSX2P35548 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX2P35548 ARL4AP2-201ENST00000507378 601 ntBASIC5.01□□□□□ -1.61
MSX2P35548 NDUFB4P2-201ENST00000509515 391 ntBASIC5.01□□□□□ -1.61
MSX2P35548 MTND6P2-201ENST00000512226 524 ntBASIC5.01□□□□□ -1.61
MSX2P35548 SNORA18.6-201ENST00000516792 115 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX2P35548 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC5.01□□□□□ -1.61
MSX2P35548 OR8A2P-201ENST00000528631 952 ntBASIC5.01□□□□□ -1.61
MSX2P35548 OR8L1P-201ENST00000534005 955 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX2P35548 CYCSP2-201ENST00000558168 301 ntBASIC5.01□□□□□ -1.61
MSX2P35548 CYCSP38-201ENST00000559840 322 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC5.01□□□□□ -1.61
MSX2P35548 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX2P35548 AC012146.2-201ENST00000576545 416 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.01□□□□□ -1.61
MSX2P35548 RN7SL356P-201ENST00000582228 248 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC5.01□□□□□ -1.61
MSX2P35548 AL138895.2-201ENST00000603019 178 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC091488.1-201ENST00000604239 660 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AL139286.1-201ENST00000604465 483 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC010200.2-201ENST00000605098 235 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC007038.2-201ENST00000608095 740 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC103710.1-201ENST00000610003 901 ntBASIC5.01□□□□□ -1.61
MSX2P35548 BX323046.1-201ENST00000610145 535 ntBASIC5.01□□□□□ -1.61
MSX2P35548 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AP001506.1-201ENST00000615444 211 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC109583.2-201ENST00000617367 129 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AC018926.3-201ENST00000618841 406 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.01□□□□□ -1.61
MSX2P35548 ABBA01000935.2-201ENST00000637477 838 ntBASIC5.01□□□□□ -1.61
MSX2P35548 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
MSX2P35548 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 149.9 ms