Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.73□□□□□ -1.65
BDNFP23560 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.73□□□□□ -1.65
BDNFP23560 AC091178.1-203ENST00000584586 279 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.73□□□□□ -1.65
BDNFP23560 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.73□□□□□ -1.65
BDNFP23560 BPIFA4P-203ENST00000603168 689 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC023762.1-201ENST00000603280 584 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC124016.2-201ENST00000610058 665 ntBASIC4.73□□□□□ -1.65
BDNFP23560 AC090116.1-201ENST00000615679 446 ntBASIC4.73□□□□□ -1.65
BDNFP23560 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 AC073968.1-201ENST00000618594 637 ntBASIC4.73□□□□□ -1.65
BDNFP23560 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
BDNFP23560 AC026634.1-201ENST00000634369 198 ntBASIC4.73□□□□□ -1.65
BDNFP23560 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC4.73□□□□□ -1.65
BDNFP23560 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
BDNFP23560 AC139769.1-204ENST00000472297 1931 ntBASIC4.73□□□□□ -1.65
BDNFP23560 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.73□□□□□ -1.65
BDNFP23560 AC130650.2-201ENST00000618736 2403 ntBASIC4.73□□□□□ -1.65
BDNFP23560 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.73□□□□□ -1.65
BDNFP23560 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
BDNFP23560 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
BDNFP23560 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.72□□□□□ -1.65
BDNFP23560 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.72□□□□□ -1.65
BDNFP23560 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 AC008033.1-201ENST00000216407 1162 ntBASIC4.72□□□□□ -1.65
BDNFP23560 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
BDNFP23560 RNU6-582P-201ENST00000362989 107 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AL161909.1-201ENST00000397390 712 ntBASIC4.72□□□□□ -1.65
BDNFP23560 FCF1P5-201ENST00000406490 482 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AC069282.1-201ENST00000411911 526 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AIMP1P1-201ENST00000418670 937 ntBASIC4.72□□□□□ -1.65
BDNFP23560 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.72□□□□□ -1.65
BDNFP23560 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.72□□□□□ -1.65
BDNFP23560 AC011998.1-201ENST00000433403 117 ntBASIC4.72□□□□□ -1.65
BDNFP23560 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.72□□□□□ -1.65
BDNFP23560 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 HMGB1P12-201ENST00000438594 598 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 TPT1P12-201ENST00000448968 492 ntBASIC4.72□□□□□ -1.65
BDNFP23560 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 RPS23P7-201ENST00000466210 444 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AC053481.1-201ENST00000467217 306 ntBASIC4.72□□□□□ -1.65
BDNFP23560 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 AC008427.1-201ENST00000503102 655 ntBASIC4.72□□□□□ -1.65
BDNFP23560 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC4.72□□□□□ -1.65
BDNFP23560 AC008837.1-201ENST00000511513 412 ntBASIC4.72□□□□□ -1.65
BDNFP23560 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC4.72□□□□□ -1.65
BDNFP23560 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC4.72□□□□□ -1.65
BDNFP23560 AC090330.1-201ENST00000588646 764 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC4.72□□□□□ -1.65
BDNFP23560 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 AC103881.1-201ENST00000603476 538 ntBASIC4.72□□□□□ -1.65
BDNFP23560 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 AC090425.2-201ENST00000608818 501 ntBASIC4.72□□□□□ -1.65
BDNFP23560 MLECP1-201ENST00000615893 709 ntBASIC4.72□□□□□ -1.65
BDNFP23560 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
BDNFP23560 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 LINC00976-201ENST00000625513 783 ntTSL 3 BASIC4.72□□□□□ -1.65
BDNFP23560 ZNF663P-202ENST00000641770 1131 ntBASIC4.72□□□□□ -1.65
BDNFP23560 GABPAP-201ENST00000419271 1356 ntBASIC4.72□□□□□ -1.65
BDNFP23560 AC111188.2-201ENST00000529697 1387 ntBASIC4.72□□□□□ -1.65
BDNFP23560 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 NXPH1-205ENST00000602349 1953 ntBASIC4.72□□□□□ -1.65
BDNFP23560 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
BDNFP23560 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
BDNFP23560 AC068254.2-201ENST00000623938 3577 ntBASIC4.71□□□□□ -1.65
BDNFP23560 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.71□□□□□ -1.65
BDNFP23560 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.71□□□□□ -1.65
BDNFP23560 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC4.71□□□□□ -1.65
BDNFP23560 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
BDNFP23560 AL365440.1-201ENST00000436135 2167 ntBASIC4.71□□□□□ -1.65
BDNFP23560 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
BDNFP23560 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
BDNFP23560 ANKRD36P1-201ENST00000344424 659 ntBASIC4.71□□□□□ -1.66
BDNFP23560 RNU6-600P-201ENST00000362524 99 ntBASIC4.71□□□□□ -1.66
BDNFP23560 RNU6-1066P-201ENST00000363573 105 ntBASIC4.71□□□□□ -1.66
BDNFP23560 AL133264.1-201ENST00000407157 562 ntBASIC4.71□□□□□ -1.66
BDNFP23560 MIR1183-201ENST00000408856 89 ntBASIC4.71□□□□□ -1.66
BDNFP23560 OR8G2P-201ENST00000412796 908 ntBASIC4.71□□□□□ -1.66
BDNFP23560 RPL21P108-201ENST00000413857 481 ntBASIC4.71□□□□□ -1.66
BDNFP23560 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 AC006548.1-201ENST00000427470 102 ntBASIC4.71□□□□□ -1.66
BDNFP23560 OFD1P12Y-201ENST00000427963 1207 ntBASIC4.71□□□□□ -1.66
BDNFP23560 RPL21P91-201ENST00000429231 479 ntBASIC4.71□□□□□ -1.66
BDNFP23560 RPS29P17-201ENST00000430795 166 ntBASIC4.71□□□□□ -1.66
BDNFP23560 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.71□□□□□ -1.66
BDNFP23560 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 PHBP16-201ENST00000446318 950 ntBASIC4.71□□□□□ -1.66
BDNFP23560 DHFRP3-201ENST00000455595 559 ntBASIC4.71□□□□□ -1.66
BDNFP23560 CEACAMP4-201ENST00000457676 421 ntBASIC4.71□□□□□ -1.66
BDNFP23560 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.71□□□□□ -1.66
BDNFP23560 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms