Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD4P09016 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD4P09016 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.86□□□□□ -1.79
HOXD4P09016 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD4P09016 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD4P09016 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HOXD4P09016 CYP1D1P-201ENST00000416662 1433 ntBASIC3.86□□□□□ -1.79
HOXD4P09016 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC3.86□□□□□ -1.79
HOXD4P09016 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC3.86□□□□□ -1.79
HOXD4P09016 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 AL161909.1-201ENST00000397390 712 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AL078604.1-201ENST00000404609 466 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 RPS3AP25-201ENST00000411660 793 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD4P09016 UBTFL3-201ENST00000418934 1024 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD4P09016 AC023128.2-201ENST00000420880 1223 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AC009965.2-201ENST00000425328 970 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 NPM1P24-201ENST00000428039 894 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AL035458.1-201ENST00000433096 585 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 AC034236.1-201ENST00000469891 373 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 S100A11P1-201ENST00000477525 312 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 UBTFL6-201ENST00000477929 1024 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC3.85□□□□□ -1.79
HOXD4P09016 MTND4LP31-201ENST00000514859 294 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 AC068446.3-201ENST00000555285 382 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AC084757.1-201ENST00000559987 490 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AGGF1P5-201ENST00000567900 919 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 MIR4509-3-201ENST00000578671 94 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 MIR548Y-201ENST00000582739 110 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 MIR4509-2-201ENST00000583920 94 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.85□□□□□ -1.79
HOXD4P09016 AC090181.2-201ENST00000602975 672 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AP002360.3-201ENST00000607673 710 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AC243654.2-201ENST00000612843 443 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 AC123768.4-201ENST00000616244 701 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AC009318.3-201ENST00000616916 503 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 MIR4509-1-201ENST00000618224 94 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 AC068787.1-201ENST00000623908 691 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 AC007546.2-201ENST00000623996 360 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 OR8B1P-202ENST00000641132 1178 ntBASIC3.85□□□□□ -1.79
HOXD4P09016 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD4P09016 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.85□□□□□ -1.79
HOXD4P09016 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HOXD4P09016 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
HOXD4P09016 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.85□□□□□ -1.79
HOXD4P09016 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.79
HOXD4P09016 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.79
HOXD4P09016 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD4P09016 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 MIR423-201ENST00000362201 94 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 RN7SKP44-201ENST00000363602 316 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 RNA5SP283-201ENST00000365604 119 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.84□□□□□ -1.79
HOXD4P09016 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD4P09016 ENSAP1-201ENST00000392855 326 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 RN7SKP182-201ENST00000410772 298 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 UBE2V1P11-201ENST00000411559 285 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 LINC01881-201ENST00000416103 412 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
HOXD4P09016 RBMY1KP-201ENST00000423480 476 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 AL451062.2-201ENST00000427515 271 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 RPS26P40-201ENST00000435209 294 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
HOXD4P09016 RPL23AP46-201ENST00000438548 490 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.84□□□□□ -1.79
HOXD4P09016 RPS27AP15-201ENST00000447672 466 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 EXOSC3P1-201ENST00000448649 500 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC3.84□□□□□ -1.79
HOXD4P09016 AL096803.2-201ENST00000450032 677 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.84□□□□□ -1.79
HOXD4P09016 RPL21P71-201ENST00000465598 459 ntBASIC3.84□□□□□ -1.79
HOXD4P09016 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms