Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SNRPEP3-201ENST00000338402 276 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RNU6-433P-201ENST00000363216 104 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RNU6-657P-201ENST00000383904 107 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SNORA5.1-201ENST00000384275 131 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC007066.1-201ENST00000392902 381 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL078604.1-201ENST00000404609 466 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 Y_RNA.619-201ENST00000410951 90 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 UBE2FP3-201ENST00000436366 524 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 YWHAZP8-201ENST00000436935 731 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RPS24P1-201ENST00000438550 371 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 ZNF652P1-201ENST00000442420 1309 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RPL36AP15-201ENST00000444514 266 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RPL10P17-201ENST00000453852 316 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SNRPGP9-201ENST00000456025 225 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RPL30P9-201ENST00000465586 330 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RN7SL481P-201ENST00000477764 299 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RPL5P22-201ENST00000480199 884 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RAD51AP1P1-201ENST00000484195 1001 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RPS4XP15-201ENST00000489210 795 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC090071.1-201ENST00000507713 644 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC079140.3-201ENST00000511111 550 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 RAB9BP1-201ENST00000519581 626 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC239860.2-201ENST00000525886 270 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AP002963.1-201ENST00000530590 184 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 OR6C7P-201ENST00000547875 934 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC090502.2-201ENST00000549267 280 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 GTF2IP22-201ENST00000554443 182 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 EIF5A2P1-201ENST00000564027 460 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC007599.1-201ENST00000568688 1174 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC123786.2-201ENST00000603459 275 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC012360.2-201ENST00000609349 391 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 DLEU2_1.1-201ENST00000612089 120 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC025594.3-201ENST00000613068 790 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 DLEU2_1.2-201ENST00000614667 120 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL049794.2-201ENST00000616301 365 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AC009509.4-201ENST00000619202 509 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL590240.3-201ENST00000621416 943 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 MIR6810-201ENST00000622701 70 ntBASIC5.1□□□□□ -1.59
TDP1Q9NUW8 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.1□□□□□ -1.59
TDP1Q9NUW8 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 MAPK10-328ENST00000641553 4009 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC093591.2-201ENST00000565254 3843 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 MTCO1P14-201ENST00000441695 1559 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 CR383658.2-201ENST00000547576 1525 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 ZNF37BP-203ENST00000452306 1352 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 RNU1-32P-201ENST00000363937 159 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 RNU2-28P-201ENST00000410457 189 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC114755.2-201ENST00000413520 361 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 BX510359.2-201ENST00000417920 305 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC073335.1-201ENST00000427776 363 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 VDAC1P6-201ENST00000430062 855 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AL359265.2-201ENST00000434367 631 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AC092013.1-201ENST00000438795 332 ntBASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC5.09□□□□□ -1.59
TDP1Q9NUW8 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 466 ms