Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AL050341.1-201ENST00000447743 313 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AL500522.2-201ENST00000448562 343 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC009220.1-201ENST00000451614 275 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 METTL15P1-201ENST00000481421 1045 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 RPS4XP15-201ENST00000489210 795 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC008837.1-201ENST00000511513 412 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC006518.2-201ENST00000542513 940 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC025260.1-201ENST00000548858 430 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 HMGB1P50-201ENST00000605814 607 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 RNU4-89P-201ENST00000607443 133 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AL451049.1-201ENST00000608672 497 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 MIR486-1-201ENST00000612171 68 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC079395.3-201ENST00000615161 484 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC009464.1-201ENST00000615731 469 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AC079684.1-201ENST00000621405 437 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AP000676.4-201ENST00000624659 623 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 GTF2H2B-203ENST00000508065 1432 ntBASIC4.2□□□□□ -1.74
SIX2Q9NPC8 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SIX2Q9NPC8 LINC02471-203ENST00000641941 4752 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RPL32P3-201ENST00000359025 275 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RNU6-543P-201ENST00000362576 108 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RNA5SP322-201ENST00000363617 119 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RNU1-89P-201ENST00000384592 164 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 MIR199A2-201ENST00000385289 110 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 CLK1-203ENST00000409769 1192 ntTSL 2 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 TCEA1P4-201ENST00000415066 844 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 VPS26BP1-201ENST00000417155 755 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 MTND4P3-201ENST00000417829 541 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 IFNNP1-201ENST00000429219 553 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC010105.1-201ENST00000437290 385 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RPL5P32-201ENST00000454085 879 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC244505.3-201ENST00000454598 187 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 OFD1P7Y-201ENST00000454643 1155 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC112673.1-201ENST00000513168 575 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC027104.1-201ENST00000563702 681 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 ATP5F1P7-201ENST00000567330 760 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 MIR548Y-201ENST00000582739 110 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC013468.1-201ENST00000608680 598 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC007308.1-201ENST00000608856 373 ntTSL 3 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 MIR6748-201ENST00000610433 71 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC083809.1-201ENST00000615051 472 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 ATE1-AS1-202ENST00000636460 506 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC099786.3-201ENST00000565735 1410 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
SIX2Q9NPC8 AC027228.2-201ENST00000567141 2154 ntBASIC4.19□□□□□ -1.74
SIX2Q9NPC8 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 AP002001.2-201ENST00000529025 1469 ntBASIC4.18□□□□□ -1.74
SIX2Q9NPC8 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
SIX2Q9NPC8 AC093311.1-201ENST00000506586 2021 ntBASIC4.18□□□□□ -1.74
SIX2Q9NPC8 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms