Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RPL31P52-201ENST00000407532 367 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AL807761.1-201ENST00000417622 171 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 BX510359.2-201ENST00000417920 305 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC009480.2-201ENST00000422916 432 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC073335.1-201ENST00000427776 363 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 UBE2V1P3-201ENST00000439651 417 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AL138878.2-201ENST00000440581 1241 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 RPL23AP43-201ENST00000446445 471 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 EEF1A1P1-201ENST00000447052 739 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC012671.1-201ENST00000451912 203 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC096992.1-201ENST00000459808 709 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 RPS26P28-201ENST00000470806 348 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC011005.3-201ENST00000491624 395 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC114322.1-201ENST00000506771 926 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC113347.3-201ENST00000509113 148 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 OR51K1P-201ENST00000510214 950 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 MRPS36P3-201ENST00000519284 130 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC090888.2-201ENST00000559765 1144 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC090515.3-201ENST00000560431 315 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC009097.3-201ENST00000563557 1018 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC022022.2-201ENST00000602989 360 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 IGKV1OR2-9-201ENST00000603957 287 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 IGKV1OR2-11-201ENST00000604120 287 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 Z99289.3-201ENST00000605586 594 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AL355493.4-201ENST00000618530 292 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 AP000346.3-201ENST00000622821 210 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 TEX41-256ENST00000626411 368 ntTSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 AC090897.3-201ENST00000636973 1157 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC3.82□□□□□ -1.8
NKX3-1Q99801 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
NKX3-1Q99801 ZNF137P-201ENST00000456718 1920 ntBASIC3.82□□□□□ -1.8
NKX3-1Q99801 DPY19L2P2-203ENST00000435536 1858 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC00622-201ENST00000562811 1570 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 ZNF876P-202ENST00000398732 1485 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 SEPT7P7-201ENST00000420492 1301 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 RNU1-15P-201ENST00000353977 144 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 SNORA71.2-201ENST00000364941 134 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 RNU6-1151P-201ENST00000384684 107 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 PRRC2CP1-201ENST00000404428 159 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AL078604.1-201ENST00000404609 466 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 HIGD1AP15-201ENST00000416198 280 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC004552.1-201ENST00000419089 348 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 RPL12P28-201ENST00000430852 489 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC084290.1-201ENST00000434995 374 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 GTF2IP7-202ENST00000436677 309 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 YWHAZP8-201ENST00000436935 731 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC093155.1-201ENST00000440164 826 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 RPS26P3-201ENST00000470205 348 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC068587.2-201ENST00000478386 781 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC126121.1-201ENST00000482313 553 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC090543.2-201ENST00000483963 348 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC004057.1-201ENST00000485827 348 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC098862.1-201ENST00000504991 413 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 AC048346.1-201ENST00000510247 144 ntBASIC3.81□□□□□ -1.8
NKX3-1Q99801 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.81□□□□□ -1.8
NKX3-1Q99801 KRT19P6-201ENST00000510983 209 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms