Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 Z98941.1-201ENST00000407764 100 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 RPL7P53-201ENST00000421245 739 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 VN1R42P-201ENST00000424651 344 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 MTCO1P54-201ENST00000430139 712 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL117339.2-201ENST00000430475 180 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 LINC01745-201ENST00000430921 372 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL162151.2-201ENST00000448875 158 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 RPS11P1-201ENST00000451072 473 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 HMGB3P22-202ENST00000451823 572 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC093267.1-201ENST00000489176 961 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC110792.1-201ENST00000491826 472 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 MTND2P31-201ENST00000512602 616 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC008494.2-201ENST00000514544 370 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC010306.1-201ENST00000523223 1117 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 PWRN3-201ENST00000566797 849 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC012254.4-201ENST00000588843 273 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL392112.1-201ENST00000605115 829 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 AC012603.1-201ENST00000606424 528 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 STMN1P1-201ENST00000617809 440 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.97□□□□□ -1.77
VPS35Q96QK1 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 MAPK10-372ENST00000641954 3413 ntBASIC3.97□□□□□ -1.77
VPS35Q96QK1 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
VPS35Q96QK1 EXOC5P1-201ENST00000510543 1969 ntBASIC3.96□□□□□ -1.77
VPS35Q96QK1 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
VPS35Q96QK1 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC119744.1-201ENST00000454746 1715 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 RNA5SP322-201ENST00000363617 119 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 OR52E6-202ENST00000379946 954 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 RNU4-6P-201ENST00000410804 122 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 RN7SKP263-201ENST00000411194 309 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL596247.1-201ENST00000416076 442 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 VDAC1P6-201ENST00000430062 855 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC003991.1-202ENST00000447058 777 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC008565.1-201ENST00000509046 885 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 FTH1P21-201ENST00000512179 511 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 LY96-202ENST00000518893 430 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC083923.1-201ENST00000523708 376 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 C1DP5-201ENST00000525775 383 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 OR8R1P-201ENST00000543943 764 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS35Q96QK1 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC125494.3-201ENST00000602759 455 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC067959.1-201ENST00000604334 379 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL731566.2-201ENST00000618971 317 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AC024595.1-201ENST00000623088 387 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL773545.4-201ENST00000637262 310 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 AL513478.4-201ENST00000641636 310 ntBASIC3.96□□□□□ -1.78
VPS35Q96QK1 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.96□□□□□ -1.78
VPS35Q96QK1 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
VPS35Q96QK1 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
VPS35Q96QK1 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.95□□□□□ -1.78
VPS35Q96QK1 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS35Q96QK1 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
VPS35Q96QK1 ENSAP3-201ENST00000312710 333 ntBASIC3.95□□□□□ -1.78
VPS35Q96QK1 RNA5SP399-201ENST00000364003 117 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms