Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH3P20585 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH3P20585 AC139769.3-201ENST00000618383 175 ntBASIC4.24□□□□□ -1.73
MSH3P20585 AC011330.2-201ENST00000621680 635 ntBASIC4.24□□□□□ -1.73
MSH3P20585 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH3P20585 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC4.24□□□□□ -1.73
MSH3P20585 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH3P20585 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC4.24□□□□□ -1.73
MSH3P20585 AC111188.2-201ENST00000529697 1387 ntBASIC4.24□□□□□ -1.73
MSH3P20585 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.24□□□□□ -1.73
MSH3P20585 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSH3P20585 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC4.23□□□□□ -1.73
MSH3P20585 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 NSRP1P1-201ENST00000444067 1693 ntBASIC4.23□□□□□ -1.73
MSH3P20585 Z82217.1-201ENST00000625157 8149 ntBASIC4.23□□□□□ -1.73
MSH3P20585 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.23□□□□□ -1.73
MSH3P20585 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 RNU1-87P-201ENST00000363727 170 ntBASIC4.23□□□□□ -1.73
MSH3P20585 RNU4-28P-201ENST00000364739 141 ntBASIC4.23□□□□□ -1.73
MSH3P20585 RHOT1P2-201ENST00000366423 333 ntBASIC4.23□□□□□ -1.73
MSH3P20585 Y_RNA.472-201ENST00000384322 102 ntBASIC4.23□□□□□ -1.73
MSH3P20585 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 AL136310.1-201ENST00000404926 654 ntBASIC4.23□□□□□ -1.73
MSH3P20585 RPL23AP48-201ENST00000406913 488 ntBASIC4.23□□□□□ -1.73
MSH3P20585 RN7SKP235-201ENST00000410662 305 ntBASIC4.23□□□□□ -1.73
MSH3P20585 RPL23AP26-201ENST00000412728 464 ntBASIC4.23□□□□□ -1.73
MSH3P20585 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 RPL22P18-201ENST00000417197 377 ntBASIC4.23□□□□□ -1.73
MSH3P20585 TRGV6-201ENST00000417928 299 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC004552.1-201ENST00000419089 348 ntBASIC4.23□□□□□ -1.73
MSH3P20585 KRR1P1-201ENST00000419430 803 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AL513175.2-201ENST00000422071 443 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 HMGB3P6-201ENST00000444896 598 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC005002.1-201ENST00000447458 540 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC004022.1-201ENST00000447766 1066 ntBASIC4.23□□□□□ -1.73
MSH3P20585 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 AC009963.2-201ENST00000453431 138 ntBASIC4.23□□□□□ -1.73
MSH3P20585 MTCO2P6-201ENST00000463134 685 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC4.23□□□□□ -1.73
MSH3P20585 RPS26P3-201ENST00000470205 348 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC109327.1-201ENST00000471666 403 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC090543.2-201ENST00000483963 348 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC004057.1-201ENST00000485827 348 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSH3P20585 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 CEACAMP10-202ENST00000495431 496 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.23□□□□□ -1.73
MSH3P20585 AL592156.1-201ENST00000508758 304 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC104108.1-201ENST00000509930 412 ntBASIC4.23□□□□□ -1.73
MSH3P20585 OR51K1P-201ENST00000510214 950 ntBASIC4.23□□□□□ -1.73
MSH3P20585 VWA8P1-201ENST00000510889 176 ntBASIC4.23□□□□□ -1.73
MSH3P20585 KCTD9P2-201ENST00000512203 1013 ntBASIC4.23□□□□□ -1.73
MSH3P20585 RNA5SP49-201ENST00000516450 115 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC4.23□□□□□ -1.73
MSH3P20585 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC4.23□□□□□ -1.73
MSH3P20585 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.23□□□□□ -1.73
MSH3P20585 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 TRAV8-5-201ENST00000537369 341 ntBASIC4.23□□□□□ -1.73
MSH3P20585 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.23□□□□□ -1.73
MSH3P20585 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 AC090888.2-201ENST00000559765 1144 ntBASIC4.23□□□□□ -1.73
MSH3P20585 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4.23□□□□□ -1.73
MSH3P20585 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 MTCO1P40-201ENST00000574371 625 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC4.23□□□□□ -1.73
MSH3P20585 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 AC113368.1-201ENST00000603736 382 ntBASIC4.23□□□□□ -1.73
MSH3P20585 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.23□□□□□ -1.73
MSH3P20585 AL355493.4-201ENST00000618530 292 ntBASIC4.23□□□□□ -1.73
MSH3P20585 VN1R7P-201ENST00000619242 903 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC090897.3-201ENST00000636973 1157 ntBASIC4.23□□□□□ -1.73
MSH3P20585 AC017104.5-201ENST00000637647 639 ntBASIC4.23□□□□□ -1.73
MSH3P20585 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.23□□□□□ -1.73
MSH3P20585 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSH3P20585 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.23□□□□□ -1.73
MSH3P20585 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
MSH3P20585 AC100871.1-201ENST00000507871 1456 ntBASIC4.23□□□□□ -1.73
MSH3P20585 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
MSH3P20585 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
MSH3P20585 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.22□□□□□ -1.73
MSH3P20585 AC097504.1-201ENST00000515103 2415 ntBASIC4.22□□□□□ -1.73
MSH3P20585 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
MSH3P20585 RNA5SP502-201ENST00000362694 119 ntBASIC4.22□□□□□ -1.73
MSH3P20585 RNU1-14P-201ENST00000362759 152 ntBASIC4.22□□□□□ -1.73
MSH3P20585 RNU1-132P-201ENST00000364300 164 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms