Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 AC011455.2-201ENST00000599320 3336 ntBASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 AL136531.3-201ENST00000624378 3658 ntBASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
NPAS3Q8IXF0 SYTL2-220ENST00000529581 1910 ntTSL 2 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 IRF6-201ENST00000367021 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 FOCAD-202ENST00000380249 6096 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 UGT2B27P-201ENST00000505092 1620 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RNU1-134P-201ENST00000362935 165 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 Y_RNA.376-201ENST00000365638 108 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RNU6-1027P-201ENST00000383998 107 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RNU6-1093P-201ENST00000391194 107 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RNU6-493P-201ENST00000391321 108 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RNU2-20P-201ENST00000410425 191 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RPL21P24-201ENST00000413752 448 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 MTCO3P29-201ENST00000432119 779 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RPL37P3-201ENST00000456825 293 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 PFN1P6-201ENST00000476786 399 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AL049874.2-201ENST00000492636 288 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC022447.4-201ENST00000504053 364 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC116655.1-201ENST00000508324 901 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC090958.1-201ENST00000511122 351 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC106800.3-201ENST00000511389 308 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 RNU6-1038P-201ENST00000516516 104 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC087360.1-201ENST00000518788 616 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC022616.3-201ENST00000523940 148 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC098848.2-201ENST00000588023 330 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC243967.1-201ENST00000598976 578 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC092447.9-201ENST00000603395 144 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AL021879.1-201ENST00000611756 288 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC109309.2-201ENST00000612597 332 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 MIR7159-201ENST00000620587 66 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC127024.6-201ENST00000621598 424 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC145207.9-201ENST00000623802 325 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AP2B1-211ENST00000610402 3204 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 CPED1-206ENST00000450913 2501 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 KPNA2P1-201ENST00000458289 1591 ntBASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
NPAS3Q8IXF0 LINC01360-203ENST00000440762 3871 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 CTNNA1P1-201ENST00000515849 2728 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 ADA2-210ENST00000610390 4137 ntTSL 5 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 AC097634.1-201ENST00000604491 2467 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 Y_RNA.46-201ENST00000362695 102 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 RNU6-1097P-201ENST00000363586 107 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 SNORD27-201ENST00000363981 72 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 Y_RNA.297-201ENST00000364950 91 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 SPRR2B-201ENST00000368755 617 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 SUGT1P1-201ENST00000379514 476 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 RNU6-190P-201ENST00000384154 102 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 Y_RNA.562-201ENST00000384695 113 ntBASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
NPAS3Q8IXF0 RPL12P12-201ENST00000424633 501 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms