Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL18A1P39060 KC6-201ENST00000592302 1713 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.36□□□□□ -1.71
COL18A1P39060 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC4.36□□□□□ -1.71
COL18A1P39060 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 CREM-206ENST00000354759 1589 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 AL033504.1-201ENST00000427015 773 ntTSL 2 BASIC4.36□□□□□ -1.71
COL18A1P39060 RPS26P47-201ENST00000427219 348 ntBASIC4.36□□□□□ -1.71
COL18A1P39060 RPS26P3-201ENST00000470205 348 ntBASIC4.36□□□□□ -1.71
COL18A1P39060 AC004057.1-201ENST00000485827 348 ntBASIC4.36□□□□□ -1.71
COL18A1P39060 AC069499.1-201ENST00000489433 509 ntBASIC4.36□□□□□ -1.71
COL18A1P39060 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.36□□□□□ -1.71
COL18A1P39060 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC4.36□□□□□ -1.71
COL18A1P39060 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC4.36□□□□□ -1.71
COL18A1P39060 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC4.36□□□□□ -1.71
COL18A1P39060 SRP72P2-201ENST00000344851 1979 ntBASIC4.36□□□□□ -1.71
COL18A1P39060 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.36□□□□□ -1.71
COL18A1P39060 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 Z95331.1-201ENST00000623075 23112 ntBASIC4.36□□□□□ -1.71
COL18A1P39060 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL18A1P39060 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.36□□□□□ -1.71
COL18A1P39060 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL18A1P39060 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL18A1P39060 MLLT3-201ENST00000380321 708 ntTSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 AL513175.1-201ENST00000431492 780 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC006028.1-201ENST00000438379 402 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 KC877373.1-201ENST00000479066 408 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC4.35□□□□□ -1.71
COL18A1P39060 AL160191.1-201ENST00000555480 566 ntTSL 4 BASIC4.35□□□□□ -1.71
COL18A1P39060 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 OOSP1P2-201ENST00000579644 351 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC005242.1-201ENST00000585658 438 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC006946.3-201ENST00000609791 756 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC233309.1-201ENST00000619522 751 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC4.35□□□□□ -1.71
COL18A1P39060 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC092111.2-201ENST00000611627 1414 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL18A1P39060 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
COL18A1P39060 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.35□□□□□ -1.71
COL18A1P39060 AL513302.2-201ENST00000562313 1842 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 MIR422A-201ENST00000362286 90 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 HMGN2P8-201ENST00000391458 268 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC017078.1-201ENST00000416146 368 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.35□□□□□ -1.71
COL18A1P39060 REREP1Y-201ENST00000422655 198 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 REREP2Y-201ENST00000439103 200 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC091826.1-201ENST00000514065 313 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 KCTD9P6-201ENST00000522306 950 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC4.35□□□□□ -1.71
COL18A1P39060 AC023389.2-201ENST00000580031 955 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 AL157817.1-201ENST00000614264 790 ntBASIC4.35□□□□□ -1.71
COL18A1P39060 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC4.35□□□□□ -1.71
COL18A1P39060 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.35□□□□□ -1.71
COL18A1P39060 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
COL18A1P39060 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL18A1P39060 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.34□□□□□ -1.71
COL18A1P39060 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL18A1P39060 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
COL18A1P39060 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
COL18A1P39060 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
COL18A1P39060 OR6K4P-201ENST00000423179 955 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 RPL35AP12-201ENST00000425362 338 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.34□□□□□ -1.71
COL18A1P39060 MRPL35P4-201ENST00000453682 566 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.34□□□□□ -1.71
COL18A1P39060 AC010374.2-201ENST00000512933 535 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 AC118465.1-201ENST00000513820 1271 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC4.34□□□□□ -1.71
COL18A1P39060 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.34□□□□□ -1.71
COL18A1P39060 AC087749.2-201ENST00000583910 352 ntTSL 5 BASIC4.34□□□□□ -1.71
COL18A1P39060 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.34□□□□□ -1.71
COL18A1P39060 AL162713.1-201ENST00000604480 262 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 AC013412.1-201ENST00000610687 192 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 BMS1P21-201ENST00000634565 365 ntBASIC4.34□□□□□ -1.71
COL18A1P39060 AL132656.3-201ENST00000606384 1595 ntBASIC4.34□□□□□ -1.72
COL18A1P39060 ZNF90P1-201ENST00000480493 1951 ntBASIC4.34□□□□□ -1.72
COL18A1P39060 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.33□□□□□ -1.72
COL18A1P39060 LINC02471-203ENST00000641941 4752 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
COL18A1P39060 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
COL18A1P39060 OR5H2-201ENST00000355273 945 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 OR5H2-202ENST00000356526 930 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
COL18A1P39060 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.33□□□□□ -1.72
COL18A1P39060 RNA5SP126-201ENST00000365092 109 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 AC117434.1-201ENST00000419971 836 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 OR2X1P-201ENST00000421144 687 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 AL357552.1-201ENST00000445254 415 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 AC005229.2-201ENST00000456995 399 ntBASIC4.33□□□□□ -1.72
COL18A1P39060 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.33□□□□□ -1.72
COL18A1P39060 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms