Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 ATG4AP1-201ENST00000416893 538 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXD3P31249 HSPD1P12-201ENST00000429127 1069 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 BMS1P19-201ENST00000433925 393 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AL161722.2-201ENST00000434731 981 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC092013.1-201ENST00000438795 332 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 RPS29P10-201ENST00000439197 166 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 AL031667.1-201ENST00000440222 725 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 MED28P3-201ENST00000444288 531 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 GYG1P1-201ENST00000460864 698 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC090602.1-201ENST00000469695 252 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC006463.2-201ENST00000473326 348 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 RPL7P16-201ENST00000479738 738 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 RNU6-405P-201ENST00000516637 110 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 DEFB131D-201ENST00000526803 184 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AP000790.1-201ENST00000528891 737 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC087276.1-201ENST00000529659 480 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC074029.1-201ENST00000552531 1044 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD3P31249 MTATP6P3-201ENST00000581686 676 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC017100.2-201ENST00000584628 355 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXD3P31249 VN1R84P-201ENST00000593697 235 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD3P31249 PSMA6P4-201ENST00000603247 718 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AL596327.1-201ENST00000603629 213 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC087283.1-201ENST00000604029 1074 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC087783.2-201ENST00000605070 562 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AL355816.1-201ENST00000607951 118 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC013476.2-201ENST00000614456 459 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC099494.2-201ENST00000623371 978 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AC231657.1-201ENST00000624313 397 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC135068.12-201ENST00000637370 931 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 AP000473.2-201ENST00000602659 1537 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXD3P31249 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 LINC01619-203ENST00000549802 2169 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXD3P31249 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 ASNSP1-201ENST00000518311 1939 ntBASIC4.03□□□□□ -1.76
HOXD3P31249 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.03□□□□□ -1.76
HOXD3P31249 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXD3P31249 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXD3P31249 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.77
HOXD3P31249 AC093535.2-201ENST00000624769 2326 ntBASIC4.03□□□□□ -1.77
HOXD3P31249 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.03□□□□□ -1.77
HOXD3P31249 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
HOXD3P31249 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 AC104118.1-201ENST00000607625 1589 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
HOXD3P31249 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXD3P31249 RNU6-501P-201ENST00000364072 100 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXD3P31249 RNU2-66P-201ENST00000410650 161 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 RPL26P29-201ENST00000415623 438 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC233981.1-201ENST00000423224 461 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXD3P31249 AL158073.1-201ENST00000426848 1104 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 VTI1BP4-201ENST00000427516 527 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AL360081.1-201ENST00000428299 555 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 RPL19P16-201ENST00000433839 588 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 RPS20P1-201ENST00000434853 354 ntBASIC4.02□□□□□ -1.77
HOXD3P31249 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXD3P31249 RPL12P46-201ENST00000436610 195 ntBASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms