Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SSR3-208ENST00000496050 579 ntTSL 4 BASIC3.41□□□□□ -1.86
USF1P22415 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 PAICSP4-201ENST00000517543 1253 ntBASIC3.41□□□□□ -1.86
USF1P22415 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 AC063950.1-201ENST00000552036 308 ntBASIC3.41□□□□□ -1.86
USF1P22415 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.41□□□□□ -1.86
USF1P22415 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 CBX3P2-202ENST00000583365 535 ntBASIC3.41□□□□□ -1.86
USF1P22415 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
USF1P22415 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.41□□□□□ -1.86
USF1P22415 MIR7151-201ENST00000617477 60 ntBASIC3.41□□□□□ -1.86
USF1P22415 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.41□□□□□ -1.86
USF1P22415 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.41□□□□□ -1.86
USF1P22415 AL713922.2-201ENST00000619384 716 ntBASIC3.41□□□□□ -1.86
USF1P22415 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC3.41□□□□□ -1.86
USF1P22415 AC022031.1-201ENST00000585985 2593 ntBASIC3.41□□□□□ -1.86
USF1P22415 DCAF13P3-201ENST00000561147 1334 ntBASIC3.41□□□□□ -1.86
USF1P22415 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
USF1P22415 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USF1P22415 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
USF1P22415 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.41□□□□□ -1.86
USF1P22415 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
USF1P22415 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
USF1P22415 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.4□□□□□ -1.86
USF1P22415 ACEA_U3.1-201ENST00000363057 217 ntBASIC3.4□□□□□ -1.87
USF1P22415 MIR449B-201ENST00000384995 97 ntBASIC3.4□□□□□ -1.87
USF1P22415 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
USF1P22415 RNA5SP44-201ENST00000410446 133 ntBASIC3.4□□□□□ -1.87
USF1P22415 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USF1P22415 AC114814.2-201ENST00000419195 485 ntBASIC3.4□□□□□ -1.87
USF1P22415 MTCO3P4-201ENST00000419236 787 ntBASIC3.4□□□□□ -1.87
USF1P22415 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USF1P22415 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USF1P22415 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC3.4□□□□□ -1.87
USF1P22415 GOT2P5-201ENST00000433995 546 ntBASIC3.4□□□□□ -1.87
USF1P22415 AC105402.2-201ENST00000438503 358 ntBASIC3.4□□□□□ -1.87
USF1P22415 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC3.4□□□□□ -1.87
USF1P22415 AL353093.1-201ENST00000441292 436 ntBASIC3.4□□□□□ -1.87
USF1P22415 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USF1P22415 NDUFAF4P2-201ENST00000445374 520 ntBASIC3.4□□□□□ -1.87
USF1P22415 TPTE2P6-202ENST00000445572 1007 ntBASIC3.4□□□□□ -1.87
USF1P22415 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.4□□□□□ -1.87
USF1P22415 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC3.4□□□□□ -1.87
USF1P22415 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC3.4□□□□□ -1.87
USF1P22415 AC099794.1-201ENST00000450811 447 ntTSL 3 BASIC3.4□□□□□ -1.87
USF1P22415 RPL36AP13-201ENST00000457490 317 ntBASIC3.4□□□□□ -1.87
USF1P22415 RPL7L1P8-201ENST00000469911 741 ntBASIC3.4□□□□□ -1.87
USF1P22415 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.4□□□□□ -1.87
USF1P22415 USP9YP5-201ENST00000511770 630 ntBASIC3.4□□□□□ -1.87
USF1P22415 RN7SKP141-201ENST00000516167 338 ntBASIC3.4□□□□□ -1.87
USF1P22415 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.4□□□□□ -1.87
USF1P22415 AC107016.1-201ENST00000550463 337 ntBASIC3.4□□□□□ -1.87
USF1P22415 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.4□□□□□ -1.87
USF1P22415 AC027176.2-201ENST00000559166 746 ntBASIC3.4□□□□□ -1.87
USF1P22415 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USF1P22415 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.4□□□□□ -1.87
USF1P22415 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC3.4□□□□□ -1.87
USF1P22415 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.4□□□□□ -1.87
USF1P22415 AP001180.3-201ENST00000582221 145 ntBASIC3.4□□□□□ -1.87
USF1P22415 MIR5684-201ENST00000585074 65 ntBASIC3.4□□□□□ -1.87
USF1P22415 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.4□□□□□ -1.87
USF1P22415 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC3.4□□□□□ -1.87
USF1P22415 AC069304.3-201ENST00000603938 1084 ntBASIC3.4□□□□□ -1.87
USF1P22415 AC243756.2-201ENST00000618406 463 ntBASIC3.4□□□□□ -1.87
USF1P22415 AC039056.2-201ENST00000622261 511 ntBASIC3.4□□□□□ -1.87
USF1P22415 AP005264.7-201ENST00000625003 745 ntBASIC3.4□□□□□ -1.87
USF1P22415 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.4□□□□□ -1.87
USF1P22415 AC027287.1-201ENST00000553115 1453 ntBASIC3.4□□□□□ -1.87
USF1P22415 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.4□□□□□ -1.87
USF1P22415 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
USF1P22415 AC018555.1-201ENST00000567548 1980 ntBASIC3.4□□□□□ -1.87
USF1P22415 MAPK10-373ENST00000641983 6772 ntBASIC3.39□□□□□ -1.87
USF1P22415 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USF1P22415 AL049737.1-201ENST00000413920 1403 ntBASIC3.39□□□□□ -1.87
USF1P22415 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
USF1P22415 ZNF962P-201ENST00000443465 3140 ntBASIC3.39□□□□□ -1.87
USF1P22415 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.39□□□□□ -1.87
USF1P22415 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
USF1P22415 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
USF1P22415 CCNB2P1-201ENST00000399411 1150 ntBASIC3.39□□□□□ -1.87
USF1P22415 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
USF1P22415 SNORA57.3-201ENST00000411095 141 ntBASIC3.39□□□□□ -1.87
USF1P22415 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.39□□□□□ -1.87
USF1P22415 MTCO1P54-201ENST00000430139 712 ntBASIC3.39□□□□□ -1.87
USF1P22415 AL035458.1-201ENST00000433096 585 ntBASIC3.39□□□□□ -1.87
USF1P22415 AC023347.2-201ENST00000433994 462 ntBASIC3.39□□□□□ -1.87
USF1P22415 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 AC010975.1-201ENST00000443301 669 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.39□□□□□ -1.87
USF1P22415 ANP32BP2-201ENST00000454525 545 ntBASIC3.39□□□□□ -1.87
USF1P22415 AC018635.1-201ENST00000468292 1030 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms