Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MRPL42P2-201ENST00000403169 426 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 RNU2-8P-201ENST00000410727 190 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 OR6E1P-201ENST00000414424 923 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 BMS1P17-202ENST00000416720 316 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 MTND3P17-201ENST00000416968 344 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC009965.2-201ENST00000425328 970 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC096632.1-201ENST00000427395 310 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 CEACAMP9-201ENST00000442990 513 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC004980.3-201ENST00000447046 365 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 UBDP1-202ENST00000457888 382 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 RN7SL72P-201ENST00000460697 269 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 SLC25A51P1-201ENST00000468432 871 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC104563.1-201ENST00000476147 376 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 RNF138P1-201ENST00000502765 546 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 OR5H5P-201ENST00000503164 928 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC008638.1-201ENST00000506035 866 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC018710.1-201ENST00000506509 158 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA3O43365 snoU109.5-201ENST00000516231 132 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 RNU6-201P-201ENST00000517100 61 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC106038.1-203ENST00000522132 362 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA3O43365 IGKV2-18-201ENST00000522607 343 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA3O43365 AF235103.2-201ENST00000525753 346 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 GLYCAM1-201ENST00000546596 285 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA3O43365 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 SULT1C2P2-201ENST00000562517 294 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC107954.1-201ENST00000565906 727 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AP005119.2-201ENST00000579735 1105 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 MIR1273E-201ENST00000581165 102 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 H3F3BP2-201ENST00000583907 357 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.67□□□□□ -1.66
HOXA3O43365 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 MIR98-201ENST00000606724 119 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC023813.4-201ENST00000607580 580 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC093388.1-201ENST00000609166 430 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC4.67□□□□□ -1.66
HOXA3O43365 AC010149.2-201ENST00000637608 315 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 AC110373.1-201ENST00000505994 3505 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 ERCC6-202ENST00000374127 1782 ntBASIC4.67□□□□□ -1.66
HOXA3O43365 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HOXA3O43365 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HOXA3O43365 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HOXA3O43365 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA3O43365 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC4.66□□□□□ -1.66
HOXA3O43365 CUZD1-205ENST00000368904 2903 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC4.66□□□□□ -1.66
HOXA3O43365 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HOXA3O43365 AC011933.2-201ENST00000578539 2790 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA3O43365 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA3O43365 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
HOXA3O43365 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA3O43365 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HOXA3O43365 RNU6-282P-201ENST00000365357 103 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 RNU6-744P-201ENST00000365557 107 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC4.66□□□□□ -1.66
HOXA3O43365 GNG5P2-201ENST00000372054 207 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 RNU6-1316P-201ENST00000384242 108 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AC127391.1-201ENST00000411737 98 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 JKAMPP1-201ENST00000413804 919 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 ZNF90P2-204ENST00000419323 1075 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AL355433.1-201ENST00000422804 300 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AC104837.2-201ENST00000427236 424 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA3O43365 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA3O43365 AC104850.1-201ENST00000435940 476 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AP000936.1-201ENST00000442124 483 ntTSL 5 BASIC4.66□□□□□ -1.66
HOXA3O43365 HSPE1P28-201ENST00000443139 211 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA3O43365 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA3O43365 RPL23AP20-201ENST00000447965 421 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 LINC01729-201ENST00000450640 358 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA3O43365 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC4.66□□□□□ -1.66
HOXA3O43365 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC4.66□□□□□ -1.66
HOXA3O43365 RPL7P15-201ENST00000461190 712 ntBASIC4.66□□□□□ -1.66
HOXA3O43365 AL133445.1-201ENST00000467051 452 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms