Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 ERCC6-202ENST00000374127 1782 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC007685.1-201ENST00000329806 452 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AL590290.1-201ENST00000405336 380 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 MIR1303-201ENST00000408625 86 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 COX6CP17-201ENST00000421389 185 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 COX6CP15-201ENST00000426313 211 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 UBE2V1P6-201ENST00000430840 422 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 MTCO1P43-201ENST00000431831 488 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 TRIM60P9Y-201ENST00000438459 816 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC009263.1-201ENST00000441193 1239 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 TRIM60P11Y-201ENST00000445313 801 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 RPL7P31-201ENST00000450192 724 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 TPMTP4-201ENST00000450749 678 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 RPL21P47-201ENST00000483696 477 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC069499.1-201ENST00000489433 509 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 HPRT1P2-201ENST00000505250 544 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 KRT19P6-201ENST00000510983 209 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC010285.3-201ENST00000511668 676 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 SNORD116-26-201ENST00000516006 96 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 MRPL49P2-201ENST00000521066 465 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 TOMM20P2-201ENST00000540082 421 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 CR383656.14-201ENST00000551951 406 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 AL355816.1-201ENST00000607951 118 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC245100.7-201ENST00000609678 442 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AC006338.2-201ENST00000616864 791 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 AP005264.7-201ENST00000625003 745 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 OR52H1-202ENST00000641796 1061 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 MTND4P31-201ENST00000425607 1343 ntBASIC3.61□□□□□ -1.83
SKA3Q8IX90 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
SKA3Q8IX90 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.61□□□□□ -1.83
SKA3Q8IX90 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC106871.1-201ENST00000568324 3102 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 MTCO1P14-201ENST00000441695 1559 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 SNORD56.4-201ENST00000363883 71 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 RNU6-481P-201ENST00000384194 107 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RN7SKP33-201ENST00000410942 340 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 PGBD4P8-201ENST00000412993 562 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 HMGB3P31-201ENST00000413333 595 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AL358472.1-201ENST00000431295 329 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 TPTE2P3-201ENST00000441562 1189 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 MOB1AP2-201ENST00000446060 614 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 RPL5P32-201ENST00000454085 879 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RPL36AP13-201ENST00000457490 317 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RPL32P14-201ENST00000463196 378 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RPL7P1-201ENST00000468161 747 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RPL7P9-201ENST00000468715 747 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 CYCSP20-201ENST00000473154 315 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 SETP6-201ENST00000479329 568 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 AL161747.1-201ENST00000480068 358 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RN7SL604P-201ENST00000492589 296 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC121161.1-201ENST00000510606 652 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 RNU7-143P-201ENST00000516781 65 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 IGKV2-36-201ENST00000519999 223 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC025884.1-201ENST00000556034 378 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC079171.1-201ENST00000568788 914 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC012417.1-201ENST00000582307 1039 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 VN1R84P-201ENST00000593697 235 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AC026741.1-201ENST00000605892 482 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.6□□□□□ -1.83
SKA3Q8IX90 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC3.6□□□□□ -1.83
SKA3Q8IX90 AL391261.4-201ENST00000616012 481 ntBASIC3.6□□□□□ -1.83
SKA3Q8IX90 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms