Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SMARCA1P28370 OR51H2P-202ENST00000641424 3046 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 IL6STP1-201ENST00000346911 1020 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 RNA5SP443-201ENST00000363083 132 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 RN7SKP115-201ENST00000363177 317 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC5.36□□□□□ -1.55
SMARCA1P28370 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 RNU6ATAC5P-201ENST00000388104 126 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 RN7SKP182-201ENST00000410772 298 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 SEPT2P1-201ENST00000419651 180 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC245028.1-201ENST00000423259 256 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AL354941.1-201ENST00000438600 464 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AL157359.2-201ENST00000440372 784 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 MTCYBP3-201ENST00000445588 1137 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 TDGF1P1-201ENST00000445734 527 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 EIF4A1P11-201ENST00000451239 222 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 RNU6ATAC28P-201ENST00000459249 118 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC5.36□□□□□ -1.55
SMARCA1P28370 BZW1P2-201ENST00000473537 826 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 RPL7P18-201ENST00000478965 734 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 GAPDHP36-201ENST00000480688 918 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 UBA52P3-201ENST00000491303 382 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 MTCYBP16-201ENST00000509187 1129 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC079395.1-201ENST00000510981 262 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC109471.1-201ENST00000511631 612 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 CA1-215ENST00000522389 551 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC004217.3-201ENST00000551552 878 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC5.36□□□□□ -1.55
SMARCA1P28370 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC133552.5-201ENST00000604266 540 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AL133338.2-201ENST00000604292 736 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 OR2AS2P-201ENST00000606902 342 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC072039.2-201ENST00000608883 439 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 AL354976.1-201ENST00000613843 387 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC116618.1-201ENST00000634617 774 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC5.36□□□□□ -1.55
SMARCA1P28370 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC107068.1-201ENST00000563286 4218 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 USP9YP4-201ENST00000424401 1745 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC119744.1-201ENST00000454746 1715 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 AC090971.4-201ENST00000560291 1800 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
SMARCA1P28370 OR14L1P-202ENST00000641545 3009 ntBASIC5.36□□□□□ -1.55
SMARCA1P28370 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
SMARCA1P28370 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.36□□□□□ -1.55
SMARCA1P28370 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMARCA1P28370 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
SMARCA1P28370 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMARCA1P28370 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 ELL2P3-201ENST00000457883 1602 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMARCA1P28370 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
SMARCA1P28370 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 RNU6-398P-201ENST00000384143 109 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AL080315.1-201ENST00000406055 466 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC119751.6-201ENST00000416712 186 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC5.35□□□□□ -1.55
SMARCA1P28370 RPL7P4-203ENST00000430239 730 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 ISCA1P2-201ENST00000438679 421 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 MTCYBP34-201ENST00000439552 670 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 MTND1P29-201ENST00000448112 647 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 CYCSP34-201ENST00000458172 304 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 XKRY-201ENST00000510392 1100 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 RN7SKP283-201ENST00000517197 270 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 AC105185.1-201ENST00000518705 535 ntBASIC5.35□□□□□ -1.55
SMARCA1P28370 LY96-202ENST00000518893 430 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.35□□□□□ -1.55
SMARCA1P28370 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms