Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 AL391262.1-201ENST00000556558 1992 ntBASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 AC018628.1-201ENST00000624147 3819 ntBASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.91□□□□□ -1.3
LIMD1Q9UGP4 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC132219.2-201ENST00000624416 2327 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC104162.1-201ENST00000430831 2382 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 TMEFF2-203ENST00000409056 3364 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 COX6B1P3-201ENST00000312310 260 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 HEPACAM2-201ENST00000341723 2122 ntAPPRIS P3 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 Y_RNA.167-201ENST00000363735 109 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 RNU6-702P-201ENST00000364982 107 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 EIF4E2P1-201ENST00000393781 255 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 RN7SKP229-201ENST00000410465 302 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 ACTR3BP6-201ENST00000422332 1241 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 CYP4F32P-201ENST00000426492 504 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 FABP7P2-201ENST00000429946 379 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 NOP56P2-201ENST00000447491 769 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 SNORD121B-201ENST00000458838 81 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC004801.2-202ENST00000463559 283 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC018645.1-201ENST00000505003 109 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 MRPS35P2-201ENST00000508242 191 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 RNU6-1038P-201ENST00000516516 104 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 RNU6-264P-201ENST00000517134 104 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC090136.1-201ENST00000520009 240 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 ZNF706-212ENST00000520984 782 ntAPPRIS P1 TSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC021698.1-201ENST00000524858 716 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC008269.2-201ENST00000561915 1105 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC026898.1-201ENST00000586404 571 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC008521.2-201ENST00000591021 259 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC113194.1-201ENST00000606037 500 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AL008729.2-201ENST00000606393 473 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 EDRF1-AS1-210ENST00000613304 569 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 NAA60-237ENST00000615865 326 ntTSL 5 BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AL049794.2-201ENST00000616301 365 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 Z69720.2-201ENST00000624755 279 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 AC129915.3-201ENST00000634128 948 ntBASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC6.9□□□□□ -1.3
LIMD1Q9UGP4 VTCN1-201ENST00000328189 2289 ntTSL 5 BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 LPAL2-203ENST00000454031 2498 ntBASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 ZNF254-206ENST00000611359 3982 ntTSL 3 BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.9□□□□□ -1.31
LIMD1Q9UGP4 AL049641.1-201ENST00000441055 1948 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 TMCO5A-205ENST00000559502 1939 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 MEF2C-254ENST00000637732 3347 ntTSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 C1D-201ENST00000355848 2233 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 AC140479.2-201ENST00000421567 3130 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 LRRC37A4P-201ENST00000579913 3243 ntTSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 RNU6-593P-201ENST00000364716 112 ntBASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.89□□□□□ -1.31
LIMD1Q9UGP4 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms