Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 AL034351.1-201ENST00000605288 668 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AP000770.2-201ENST00000623694 100 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 AC008013.2-202ENST00000637965 364 ntBASIC3.98□□□□□ -1.77
NDE1Q9NXR1 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.98□□□□□ -1.77
NDE1Q9NXR1 LINC01828-203ENST00000452716 3250 ntTSL 5 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 ZNF849P-201ENST00000594711 1566 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC109780.1-201ENST00000451768 1344 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 ERCC6-202ENST00000374127 1782 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 XIAPP3-201ENST00000312918 795 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 MIR1251-201ENST00000408552 70 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 FAR2P2-201ENST00000413041 594 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC01048-201ENST00000414480 511 ntTSL 2 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC246680.2-201ENST00000422106 389 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC092809.1-201ENST00000441469 474 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 RPL7P61-201ENST00000451721 751 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 HMGB3P21-201ENST00000452483 547 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC021146.1-201ENST00000511202 716 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 OR5AZ1P-201ENST00000527448 943 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 OR5M2P-201ENST00000529003 936 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 MTCYBP23-201ENST00000558717 1102 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC022884.3-201ENST00000579571 248 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC006116.5-201ENST00000591936 559 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AL160237.3-201ENST00000604114 1013 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC073387.2-201ENST00000604797 784 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 OR2BH1P-201ENST00000608850 864 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC006946.3-201ENST00000609791 756 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC096586.1-201ENST00000610267 561 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AL356863.1-201ENST00000623378 1080 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC068787.1-201ENST00000623908 691 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC140479.6-201ENST00000633535 357 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC006927.4-201ENST00000639187 543 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC139713.2-210ENST00000641741 992 ntBASIC3.97□□□□□ -1.77
NDE1Q9NXR1 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
NDE1Q9NXR1 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.96□□□□□ -1.77
NDE1Q9NXR1 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
NDE1Q9NXR1 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
NDE1Q9NXR1 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.96□□□□□ -1.77
NDE1Q9NXR1 GTF2H2B-203ENST00000508065 1432 ntBASIC3.96□□□□□ -1.77
NDE1Q9NXR1 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.96□□□□□ -1.77
NDE1Q9NXR1 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC3.96□□□□□ -1.77
NDE1Q9NXR1 UBE3AP2-201ENST00000429033 2259 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 RNMT-203ENST00000543302 1849 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC008033.1-201ENST00000216407 1162 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 OR5P1P-201ENST00000299512 925 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 RNU1-130P-201ENST00000363930 160 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 RNU4-31P-201ENST00000384211 141 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 RNU6-171P-201ENST00000384354 107 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 SNORD65C-201ENST00000390962 71 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 RPS3AP25-201ENST00000411660 793 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AL772161.1-201ENST00000439130 476 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AL353093.1-201ENST00000441292 436 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 ARL5AP2-201ENST00000444698 533 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 EEF1B2P5-201ENST00000444820 548 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 ZNF736P8Y-201ENST00000451913 669 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC091685.2-201ENST00000454924 864 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 DNAJC19P1-201ENST00000455312 319 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC092324.1-201ENST00000468671 324 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC3.96□□□□□ -1.78
NDE1Q9NXR1 AC108471.1-201ENST00000513977 287 ntBASIC3.96□□□□□ -1.78
NDE1Q9NXR1 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms