Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 RNU6-272P-201ENST00000411028 104 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 RPS20P14-201ENST00000412545 360 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC119751.6-201ENST00000416712 186 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC069213.2-201ENST00000420238 366 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC073264.2-201ENST00000448886 166 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AL139824.2-201ENST00000458731 1095 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 RPS27AP17-201ENST00000463344 455 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 RPL5P30-201ENST00000465511 891 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC104689.1-201ENST00000473356 768 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC069528.1-202ENST00000482888 637 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 IGLV2-34-201ENST00000490007 283 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 RPS6P4-201ENST00000494693 758 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC118282.1-201ENST00000506408 765 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 LINC01216-201ENST00000515728 824 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 RN7SKP287-201ENST00000516546 266 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC008694.2-201ENST00000517591 306 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC026407.1-201ENST00000518369 204 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC084757.1-201ENST00000559987 490 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC009101.2-201ENST00000564293 456 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC069366.1-201ENST00000583159 838 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC093424.1-201ENST00000604999 338 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC092106.3-201ENST00000611308 722 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC109809.1-201ENST00000619665 545 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC013470.4-201ENST00000619978 986 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 ALG13-230ENST00000623189 458 ntTSL 3 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC3.86□□□□□ -1.79
NKX3-1Q99801 AC011266.1-201ENST00000624119 3569 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 Z98755.1-201ENST00000407015 1384 ntBASIC3.86□□□□□ -1.79
NKX3-1Q99801 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
NKX3-1Q99801 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC022031.1-201ENST00000585985 2593 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
NKX3-1Q99801 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 MIR448-201ENST00000362131 111 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 SNORD116.1-201ENST00000365628 92 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 RNU6-636P-201ENST00000384598 107 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 RNU6-146P-201ENST00000384602 108 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 MTCO2P31-201ENST00000402702 684 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 RN7SKP267-201ENST00000410381 285 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 RN7SKP106-201ENST00000410832 272 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC016397.1-201ENST00000412463 242 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 GSTM3P2-201ENST00000412746 530 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 PRELID3BP11-201ENST00000414230 479 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 RPL37P1-201ENST00000432310 284 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 HMGB1P16-201ENST00000447155 540 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC233982.1-201ENST00000451247 436 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 FGF7P3-201ENST00000454645 303 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 USP9YP25-201ENST00000457708 443 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC020898.1-201ENST00000474167 787 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 RPL23AP44-201ENST00000482216 473 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC011037.1-201ENST00000483964 558 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 ALDH7A1P3-201ENST00000492517 345 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
NKX3-1Q99801 MTCYBP35-201ENST00000503630 1137 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC008885.2-201ENST00000509506 930 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 SNORD116-26-201ENST00000516006 96 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AC090151.1-201ENST00000520784 730 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 AF279873.1-201ENST00000523393 313 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 OR4A2P-201ENST00000527276 913 ntBASIC3.85□□□□□ -1.79
NKX3-1Q99801 GCSAML-207ENST00000527541 1094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms