Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC139713.2-214ENST00000642059 1811 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC006378.2-201ENST00000623178 2476 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 RNA5SP492-201ENST00000411330 114 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 RFESDP1-201ENST00000422350 461 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 SDCBPP2-201ENST00000424643 885 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 ETF1P3-201ENST00000430422 1160 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC140076.1-201ENST00000449897 361 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 RPL21P104-201ENST00000464143 478 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC022034.3-201ENST00000471393 478 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC093840.1-201ENST00000511599 336 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC099522.1-202ENST00000514718 367 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 SOD1P3-201ENST00000518682 454 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 OR7E13P-201ENST00000526052 910 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 ELOCP31-201ENST00000540463 467 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 APPL2-203ENST00000546731 684 ntTSL 2 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC026826.3-201ENST00000561747 158 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 BNIP3P5-201ENST00000562290 498 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC006504.3-201ENST00000586818 523 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC010928.3-201ENST00000587712 541 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC121761.2-201ENST00000617300 689 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 SNHG22-203ENST00000617833 660 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC112694.2-201ENST00000623697 768 ntBASIC2.09□□□□□ -2.07
LINC00643Q86TS7 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC2.09□□□□□ -2.07
LINC00643Q86TS7 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
LINC00643Q86TS7 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC2.09□□□□□ -2.08
LINC00643Q86TS7 AL158163.1-201ENST00000603915 1649 ntBASIC2.09□□□□□ -2.08
LINC00643Q86TS7 MFSD8-233ENST00000641482 4860 ntBASIC2.09□□□□□ -2.08
LINC00643Q86TS7 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.08
LINC00643Q86TS7 CD36-221ENST00000534394 1741 ntTSL 2 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL23AP57-201ENST00000332361 466 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RNA5SP191-201ENST00000362585 102 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 MIR27A-201ENST00000385073 78 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 GTF3AP1-201ENST00000416942 1004 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 KCTD10P1-201ENST00000434203 625 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL36AP6-201ENST00000435770 321 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPS11P1-201ENST00000451072 473 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL7P32-201ENST00000457119 744 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 ANK3-207ENST00000460468 677 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL21P10-201ENST00000463521 490 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL21P126-201ENST00000470049 478 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL21P103-201ENST00000479921 488 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RN7SL691P-201ENST00000494487 301 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 RPL21P131-201ENST00000497298 483 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AIG1P1-201ENST00000503376 148 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 YPEL5P3-201ENST00000547227 352 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 NACA-211ENST00000548563 827 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC090695.1-201ENST00000561269 1222 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 BGLT3-201ENST00000564523 994 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 MIR3154-201ENST00000577829 84 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC138761.3-201ENST00000579993 334 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AP000787.2-201ENST00000604432 568 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AP003355.3-201ENST00000623465 114 ntBASIC2.08□□□□□ -2.08
LINC00643Q86TS7 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC2.08□□□□□ -2.08
LINC00643Q86TS7 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
LINC00643Q86TS7 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms