Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 AC110801.1-201ENST00000623590 212 ntBASIC3.82□□□□□ -1.8
COL4A4P53420 BANCR-201ENST00000624238 473 ntTSL 2 BASIC3.82□□□□□ -1.8
COL4A4P53420 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 GPR18-203ENST00000397473 1660 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A4P53420 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL4A4P53420 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.82□□□□□ -1.8
COL4A4P53420 FAM35DP-201ENST00000323387 2712 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
COL4A4P53420 ANKRD36P1-201ENST00000344424 659 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 AL357075.1-201ENST00000404107 726 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 BX323014.1-201ENST00000412876 237 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 HSPE1P27-201ENST00000430808 296 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC010655.1-201ENST00000449336 292 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 BLNK-209ENST00000495266 440 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A4P53420 PTGES3P3-201ENST00000511479 482 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 RNA5SP341-201ENST00000516261 117 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 RNU6-579P-201ENST00000516879 102 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC022882.1-201ENST00000532142 501 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 HMGB1P50-201ENST00000605814 607 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC024933.1-201ENST00000608472 348 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A4P53420 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A4P53420 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A4P53420 SRP72P2-201ENST00000344851 1979 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A4P53420 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL4A4P53420 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC3.81□□□□□ -1.8
COL4A4P53420 SYT14P1-202ENST00000600441 1448 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 SMG1P4-204ENST00000523028 4131 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 U3.39-201ENST00000408569 239 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 MTND2P39-201ENST00000457230 764 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC068768.1-204ENST00000544890 796 ntTSL 4 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.81□□□□□ -1.8
COL4A4P53420 AC006116.10-201ENST00000591836 581 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 YPEL5P2-201ENST00000605553 359 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.81□□□□□ -1.8
COL4A4P53420 AL162274.2-201ENST00000614406 332 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC138932.5-201ENST00000617759 563 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AC103858.2-201ENST00000621471 543 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 AL138960.2-201ENST00000625145 535 ntBASIC3.81□□□□□ -1.8
COL4A4P53420 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
COL4A4P53420 TNRC6B-206ENST00000454349 18279 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
COL4A4P53420 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC3.8□□□□□ -1.8
COL4A4P53420 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A4P53420 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL4A4P53420 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 TMCO2-201ENST00000372766 739 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A4P53420 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 RFESDP1-201ENST00000422350 461 ntBASIC3.8□□□□□ -1.8
COL4A4P53420 AC013410.2-201ENST00000422627 201 ntBASIC3.8□□□□□ -1.8
COL4A4P53420 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A4P53420 AC121764.1-201ENST00000472238 563 ntTSL 4 BASIC3.8□□□□□ -1.8
COL4A4P53420 AC012123.2-201ENST00000485809 248 ntBASIC3.8□□□□□ -1.8
COL4A4P53420 UBA52P3-201ENST00000491303 382 ntBASIC3.8□□□□□ -1.8
COL4A4P53420 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A4P53420 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A4P53420 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.8□□□□□ -1.8
COL4A4P53420 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC3.8□□□□□ -1.8
COL4A4P53420 AL132657.2-201ENST00000564417 358 ntBASIC3.8□□□□□ -1.8
COL4A4P53420 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 AC090337.1-201ENST00000579651 2074 ntBASIC3.8□□□□□ -1.8
COL4A4P53420 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A4P53420 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC3.8□□□□□ -1.8
COL4A4P53420 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
COL4A4P53420 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL4A4P53420 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL4A4P53420 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 MUC2-202ENST00000613187 4845 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
COL4A4P53420 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC3.79□□□□□ -1.8
COL4A4P53420 TAF9BP1-201ENST00000396646 746 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 MTHFD2P2-201ENST00000407725 247 ntBASIC3.79□□□□□ -1.8
COL4A4P53420 RN7SKP53-201ENST00000411337 315 ntBASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms