Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC9P31274 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC9P31274 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC9P31274 VN1R40P-201ENST00000455196 941 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AC121161.1-201ENST00000510606 652 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 RN7SKP18-201ENST00000516005 275 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AC104115.2-201ENST00000523026 687 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 CD69-203ENST00000536709 1020 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXC9P31274 GNRHR2P1-201ENST00000555315 631 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AC122134.1-201ENST00000565664 1104 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AC092354.2-201ENST00000607786 514 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AF129408.1-201ENST00000608767 431 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AL356274.1-201ENST00000617064 410 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 MIR7975-201ENST00000619350 68 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 AC068880.4-201ENST00000623082 495 ntBASIC5.06□□□□□ -1.6
HOXC9P31274 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC5.06□□□□□ -1.6
HOXC9P31274 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC5.06□□□□□ -1.6
HOXC9P31274 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
HOXC9P31274 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC9P31274 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 HMGB1P10-201ENST00000395823 563 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 XKRYP4-201ENST00000414395 483 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 BX664727.1-201ENST00000416024 466 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC5.05□□□□□ -1.6
HOXC9P31274 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXC9P31274 SNORA71B-202ENST00000439232 272 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HOXC9P31274 XKRYP5-201ENST00000449659 483 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 PPIAP3-201ENST00000450588 505 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 AC021205.1-201ENST00000468797 348 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 OR5H3P-201ENST00000502817 919 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 RNU5A-7P-201ENST00000515979 116 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HOXC9P31274 MTND6P33-201ENST00000571794 183 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC9P31274 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC5.05□□□□□ -1.6
HOXC9P31274 AC068620.3-201ENST00000602749 560 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 AL158050.2-201ENST00000605336 568 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 AP000255.1-201ENST00000610276 676 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.05□□□□□ -1.6
HOXC9P31274 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.05□□□□□ -1.6
HOXC9P31274 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
HOXC9P31274 AC007342.7-201ENST00000624610 2337 ntBASIC5.05□□□□□ -1.6
HOXC9P31274 MTCO1P12-201ENST00000414273 1543 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC9P31274 ATF1P1-201ENST00000406040 927 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 RNU2-65P-201ENST00000410162 185 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC9P31274 GSTM3P2-201ENST00000412746 530 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC9P31274 OR51A6P-201ENST00000418680 1004 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 DYNLL1P7-201ENST00000429273 258 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC9P31274 SETD6P1-201ENST00000444575 317 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 RPS3AP46-201ENST00000448352 682 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC9P31274 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC9P31274 RFESD-208ENST00000513950 464 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC9P31274 CIR1P1-201ENST00000524055 1133 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 OR5B10P-201ENST00000532869 642 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC9P31274 AC006960.3-201ENST00000561845 705 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC9P31274 AC126365.2-201ENST00000580630 379 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.04□□□□□ -1.6
HOXC9P31274 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC9P31274 AL591424.2-201ENST00000617023 128 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AC091953.5-201ENST00000622919 233 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AP003476.1-201ENST00000623984 516 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AL356118.1-201ENST00000635272 1078 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC5.04□□□□□ -1.6
HOXC9P31274 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC9P31274 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC5.04□□□□□ -1.6
HOXC9P31274 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC5.04□□□□□ -1.6
HOXC9P31274 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
HOXC9P31274 AL049781.1-201ENST00000623195 3585 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 DDX18P4-201ENST00000511690 1966 ntBASIC5.04□□□□□ -1.6
HOXC9P31274 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXC9P31274 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXC9P31274 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXC9P31274 SPATA2P1-201ENST00000431223 2055 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
HOXC9P31274 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXC9P31274 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC5.03□□□□□ -1.6
HOXC9P31274 MTND5P11-201ENST00000511037 1812 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 RNU6-481P-201ENST00000384194 107 ntBASIC5.03□□□□□ -1.6
HOXC9P31274 AL034374.1-201ENST00000406329 351 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms