Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AL139095.1-201ENST00000404326 391 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 RNA5SP129-201ENST00000410276 118 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 RNA5SP113-201ENST00000410486 84 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 MRPL50P2-201ENST00000416821 482 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 PA2G4P1-201ENST00000442248 1197 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 NOTCH2P1-201ENST00000443481 624 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC097262.1-201ENST00000452559 548 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC007967.1-201ENST00000455422 1159 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 RPL7AP52-201ENST00000458096 790 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 HMGN2P13-201ENST00000476476 274 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AP004217.1-201ENST00000480579 346 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 GAPDHP36-201ENST00000480688 918 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AP001025.2-201ENST00000490908 477 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 PTPN20-221ENST00000509599 945 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC023161.2-201ENST00000551218 780 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC068790.7-201ENST00000602347 528 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC091057.2-201ENST00000602594 792 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AL109653.1-201ENST00000603091 248 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AP003117.2-201ENST00000606010 545 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC009779.8-202ENST00000607990 932 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 MIR6868-201ENST00000611215 58 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC124944.3-204ENST00000641191 150 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AC004925.1-201ENST00000624256 2706 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 ST7-212ENST00000422922 1887 ntTSL 5 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC023490.2-201ENST00000359859 470 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 RNU1-109P-201ENST00000383960 147 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 RPL31P1-201ENST00000398116 372 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 TCEA1P4-201ENST00000415066 844 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 TMSB10P2-201ENST00000416049 131 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 HSPE1P27-201ENST00000430808 296 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AL022324.2-201ENST00000434827 780 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 CST9LP2-201ENST00000437612 320 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 RN7SL459P-201ENST00000481078 302 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AL132838.2-201ENST00000492041 314 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 RN7SL604P-201ENST00000492589 296 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 RN7SL466P-201ENST00000497546 295 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC010627.1-201ENST00000503819 1294 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MGST2-204ENST00000506797 634 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC112191.2-201ENST00000522428 333 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AF279873.1-201ENST00000523393 313 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 CASP1P2-201ENST00000526830 1258 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC004486.1-201ENST00000546846 233 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC008147.3-201ENST00000548666 354 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC069061.3-201ENST00000582254 823 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 C17orf80-208ENST00000582793 531 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MIR3670-2-201ENST00000582974 65 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MIR3670-1-201ENST00000584160 65 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MIR3670-3-201ENST00000584855 65 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 LLPHP1-201ENST00000603571 367 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC091167.4-201ENST00000605079 184 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MIR3670-4-201ENST00000612260 65 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC083809.1-201ENST00000615051 472 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC006065.5-201ENST00000623427 349 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC079228.1-201ENST00000624774 1049 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 AP000553.6-201ENST00000641242 118 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 EIF2AP4-201ENST00000424793 1781 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MTND5P24-201ENST00000438892 1767 ntBASIC2.1□□□□□ -2.07
LINC00643Q86TS7 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.1□□□□□ -2.07
LINC00643Q86TS7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms