Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC4□□□□□ -1.77
SOX3P41225 AL731566.2-201ENST00000618971 317 ntBASIC4□□□□□ -1.77
SOX3P41225 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4□□□□□ -1.77
SOX3P41225 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
SOX3P41225 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4□□□□□ -1.77
SOX3P41225 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
SOX3P41225 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 MTCO1P6-201ENST00000481192 1384 ntBASIC4□□□□□ -1.77
SOX3P41225 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4□□□□□ -1.77
SOX3P41225 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
SOX3P41225 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC3.99□□□□□ -1.77
SOX3P41225 AC104446.1-201ENST00000613728 1321 ntBASIC3.99□□□□□ -1.77
SOX3P41225 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 AL133243.3-201ENST00000617415 3004 ntBASIC3.99□□□□□ -1.77
SOX3P41225 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.99□□□□□ -1.77
SOX3P41225 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SOX3P41225 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.99□□□□□ -1.77
SOX3P41225 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SOX3P41225 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SOX3P41225 RNA5SP175-201ENST00000364275 119 ntBASIC3.99□□□□□ -1.77
SOX3P41225 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SOX3P41225 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 MIR525-201ENST00000384978 85 ntBASIC3.99□□□□□ -1.77
SOX3P41225 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC3.99□□□□□ -1.77
SOX3P41225 TRIM60P5Y-201ENST00000413946 574 ntBASIC3.99□□□□□ -1.77
SOX3P41225 SLC4A1APP1-201ENST00000419995 602 ntBASIC3.99□□□□□ -1.77
SOX3P41225 MFSD13B-201ENST00000420133 1290 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.99□□□□□ -1.77
SOX3P41225 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC3.99□□□□□ -1.77
SOX3P41225 MTCO2P17-201ENST00000424336 677 ntBASIC3.99□□□□□ -1.77
SOX3P41225 OSTCP5-201ENST00000425293 453 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.99□□□□□ -1.77
SOX3P41225 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.99□□□□□ -1.77
SOX3P41225 ELOCP10-201ENST00000440624 327 ntBASIC3.99□□□□□ -1.77
SOX3P41225 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 AC099063.2-201ENST00000446360 662 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AC005002.1-201ENST00000447458 540 ntBASIC3.99□□□□□ -1.77
SOX3P41225 NUTF2P3-201ENST00000448540 384 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AL451050.1-201ENST00000450126 415 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AL009048.1-201ENST00000450437 298 ntBASIC3.99□□□□□ -1.77
SOX3P41225 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 DNAJC19P8-201ENST00000452887 259 ntBASIC3.99□□□□□ -1.77
SOX3P41225 UQCRHP4-201ENST00000471686 272 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AC105137.1-201ENST00000484355 562 ntBASIC3.99□□□□□ -1.77
SOX3P41225 RPL35P6-201ENST00000490024 372 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AC108475.1-201ENST00000507880 950 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AC008837.1-201ENST00000511513 412 ntBASIC3.99□□□□□ -1.77
SOX3P41225 HNRNPKP5-201ENST00000515300 253 ntBASIC3.99□□□□□ -1.77
SOX3P41225 IGKV2-36-201ENST00000519999 223 ntBASIC3.99□□□□□ -1.77
SOX3P41225 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC3.99□□□□□ -1.77
SOX3P41225 NDUFS5P6-201ENST00000529136 295 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.99□□□□□ -1.77
SOX3P41225 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC3.99□□□□□ -1.77
SOX3P41225 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.99□□□□□ -1.77
SOX3P41225 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC3.99□□□□□ -1.77
SOX3P41225 MTCO2P2-201ENST00000591258 225 ntBASIC3.99□□□□□ -1.77
SOX3P41225 PSMA6P4-201ENST00000603247 718 ntBASIC3.99□□□□□ -1.77
SOX3P41225 ELOCP34-201ENST00000604436 327 ntBASIC3.99□□□□□ -1.77
SOX3P41225 BNIP3P4-201ENST00000604946 565 ntBASIC3.99□□□□□ -1.77
SOX3P41225 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.99□□□□□ -1.77
SOX3P41225 AL445567.2-201ENST00000618935 498 ntBASIC3.99□□□□□ -1.77
SOX3P41225 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 AL078595.3-201ENST00000623815 1166 ntBASIC3.99□□□□□ -1.77
SOX3P41225 AC016717.3-201ENST00000624730 554 ntBASIC3.99□□□□□ -1.77
SOX3P41225 ATE1-AS1-202ENST00000636460 506 ntBASIC3.99□□□□□ -1.77
SOX3P41225 BX649567.1-201ENST00000642071 1134 ntBASIC3.99□□□□□ -1.77
SOX3P41225 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
SOX3P41225 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC3.99□□□□□ -1.77
SOX3P41225 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC3.99□□□□□ -1.77
SOX3P41225 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
SOX3P41225 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC3.99□□□□□ -1.77
SOX3P41225 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
SOX3P41225 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC3.98□□□□□ -1.77
SOX3P41225 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 MIR383-201ENST00000362257 73 ntBASIC3.98□□□□□ -1.77
SOX3P41225 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SOX3P41225 AL512430.2-201ENST00000406786 339 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC073136.2-201ENST00000417282 849 ntBASIC3.98□□□□□ -1.77
SOX3P41225 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX3P41225 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC3.98□□□□□ -1.77
SOX3P41225 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX3P41225 USP12PY-201ENST00000427677 1064 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX3P41225 AL132765.1-201ENST00000434165 553 ntBASIC3.98□□□□□ -1.77
SOX3P41225 RPS7P5-201ENST00000441482 581 ntBASIC3.98□□□□□ -1.77
SOX3P41225 TPTE2P6-202ENST00000445572 1007 ntBASIC3.98□□□□□ -1.77
SOX3P41225 AL929288.2-201ENST00000446368 407 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms