Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.3□□□□□ -1.72
MSH3P20585 MIR1911-201ENST00000410783 80 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC016397.1-201ENST00000412463 242 ntBASIC4.3□□□□□ -1.72
MSH3P20585 FAR2P2-201ENST00000413041 594 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC011933.1-201ENST00000413334 321 ntBASIC4.3□□□□□ -1.72
MSH3P20585 LINC01881-201ENST00000416103 412 ntBASIC4.3□□□□□ -1.72
MSH3P20585 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 XKRYP1-201ENST00000423438 492 ntBASIC4.3□□□□□ -1.72
MSH3P20585 FAR2P4-202ENST00000425399 584 ntBASIC4.3□□□□□ -1.72
MSH3P20585 RPEP2-201ENST00000432149 701 ntBASIC4.3□□□□□ -1.72
MSH3P20585 XKRYP2-201ENST00000432915 492 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 VN1R25P-201ENST00000443385 738 ntBASIC4.3□□□□□ -1.72
MSH3P20585 EIF4A1P11-201ENST00000451239 222 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC244505.3-201ENST00000454598 187 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC092155.2-201ENST00000454675 477 ntBASIC4.3□□□□□ -1.72
MSH3P20585 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC4.3□□□□□ -1.72
MSH3P20585 AC116533.1-201ENST00000459748 321 ntBASIC4.3□□□□□ -1.72
MSH3P20585 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 AC021146.5-201ENST00000503544 545 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.3□□□□□ -1.72
MSH3P20585 C1GALT1P3-201ENST00000522049 819 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 AC083923.1-201ENST00000523708 376 ntBASIC4.3□□□□□ -1.72
MSH3P20585 PHBP17-201ENST00000528576 541 ntBASIC4.3□□□□□ -1.72
MSH3P20585 LRRC6P1-201ENST00000532188 885 ntBASIC4.3□□□□□ -1.72
MSH3P20585 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC095057.3-201ENST00000567102 1157 ntBASIC4.3□□□□□ -1.72
MSH3P20585 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 AC234772.3-201ENST00000602277 528 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC125494.3-201ENST00000602759 455 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC090525.3-201ENST00000605601 189 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC015813.4-201ENST00000610469 179 ntBASIC4.3□□□□□ -1.72
MSH3P20585 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.3□□□□□ -1.72
MSH3P20585 AC009159.2-201ENST00000617603 606 ntBASIC4.3□□□□□ -1.72
MSH3P20585 STMN1P1-201ENST00000617809 440 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC123767.1-202ENST00000620407 817 ntBASIC4.3□□□□□ -1.72
MSH3P20585 AC024595.1-201ENST00000623088 387 ntBASIC4.3□□□□□ -1.72
MSH3P20585 U6.107-201ENST00000637108 79 ntBASIC4.3□□□□□ -1.72
MSH3P20585 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
MSH3P20585 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC4.3□□□□□ -1.72
MSH3P20585 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.3□□□□□ -1.72
MSH3P20585 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC4.3□□□□□ -1.72
MSH3P20585 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
MSH3P20585 EIF2AP4-201ENST00000424793 1781 ntBASIC4.3□□□□□ -1.72
MSH3P20585 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
MSH3P20585 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
MSH3P20585 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 ANKRD36P1-201ENST00000344424 659 ntBASIC4.29□□□□□ -1.72
MSH3P20585 RNU6-98P-201ENST00000384173 107 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC097374.1-203ENST00000400783 485 ntBASIC4.29□□□□□ -1.72
MSH3P20585 RPS7P9-201ENST00000414704 586 ntBASIC4.29□□□□□ -1.72
MSH3P20585 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.29□□□□□ -1.72
MSH3P20585 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 RPL18P10-201ENST00000425606 538 ntBASIC4.29□□□□□ -1.72
MSH3P20585 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 YWHAEP5-201ENST00000431545 765 ntBASIC4.29□□□□□ -1.72
MSH3P20585 RPL7P29-201ENST00000437151 728 ntBASIC4.29□□□□□ -1.72
MSH3P20585 RPL23AP52-201ENST00000439311 478 ntBASIC4.29□□□□□ -1.72
MSH3P20585 CBX1P1-201ENST00000440184 427 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH3P20585 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 RPL7P22-201ENST00000466005 733 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.29□□□□□ -1.72
MSH3P20585 AC079203.1-201ENST00000487972 404 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC4.29□□□□□ -1.72
MSH3P20585 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 PRELID3BP5-201ENST00000508612 460 ntBASIC4.29□□□□□ -1.72
MSH3P20585 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH3P20585 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 AC119751.1-201ENST00000513357 765 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH3P20585 IGKV2D-10-201ENST00000520194 281 ntBASIC4.29□□□□□ -1.72
MSH3P20585 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.29□□□□□ -1.72
MSH3P20585 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 AC139103.1-201ENST00000534696 1030 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.29□□□□□ -1.72
MSH3P20585 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC4.29□□□□□ -1.72
MSH3P20585 AC018552.3-201ENST00000567416 561 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.29□□□□□ -1.72
MSH3P20585 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC4.29□□□□□ -1.72
MSH3P20585 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 AC022022.2-201ENST00000602989 360 ntBASIC4.29□□□□□ -1.72
MSH3P20585 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
MSH3P20585 AC116447.1-201ENST00000613153 453 ntBASIC4.29□□□□□ -1.72
MSH3P20585 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.29□□□□□ -1.72
MSH3P20585 AP000676.4-201ENST00000624659 623 ntBASIC4.29□□□□□ -1.72
MSH3P20585 AL121594.5-201ENST00000631724 573 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 142 ms