Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RPL23AP81-201ENST00000455252 467 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC091564.1-201ENST00000464563 479 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC104689.1-201ENST00000473356 768 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC108022.1-201ENST00000493466 478 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC021146.3-201ENST00000511911 260 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 NPM1P41-201ENST00000512920 831 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 RN7SKP96-201ENST00000516948 297 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 CYCSP28-201ENST00000534284 321 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC027104.1-201ENST00000563702 681 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC010201.1-201ENST00000605051 540 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 MIR6867-201ENST00000610636 67 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AC004777.1-201ENST00000624317 287 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 AL590396.2-201ENST00000636511 1041 ntBASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
HDDC3Q8N4P3 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 XPOTP1-201ENST00000443317 2398 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 SNORD46.1-201ENST00000364139 104 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RNA5SP387-201ENST00000364226 106 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RNU6-1293P-201ENST00000384077 107 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RNU6-761P-201ENST00000384148 107 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RNU1-44P-201ENST00000384453 163 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC092745.2-202ENST00000411880 369 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RPS15AP40-201ENST00000419621 391 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC092832.1-201ENST00000422934 400 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RRM2P4-201ENST00000441721 562 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 PPIAP3-201ENST00000450588 505 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RPL5P32-201ENST00000454085 879 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 VN1R105P-201ENST00000486595 910 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC010460.1-201ENST00000507087 466 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RNA5SP73-201ENST00000516744 108 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 OSBPL9P3-201ENST00000534523 595 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC074029.1-201ENST00000552531 1044 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RN7SL600P-201ENST00000581811 299 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC079880.2-201ENST00000603790 1213 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AL451086.1-201ENST00000605596 223 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RNU6-156P-201ENST00000621869 107 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AC138907.10-201ENST00000623708 983 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AP001002.1-201ENST00000625148 1513 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AL133243.3-201ENST00000617415 3004 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 SEC63P2-201ENST00000503863 1939 ntBASIC4.29□□□□□ -1.72
HDDC3Q8N4P3 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC104446.1-201ENST00000613728 1321 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AL133412.1-201ENST00000380194 2992 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 RNU6-525P-201ENST00000363685 104 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 RNA5SP27-201ENST00000363839 119 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 SNORA70E-201ENST00000384492 135 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 RNU6-1005P-201ENST00000384519 107 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 RPL21P65-201ENST00000406094 466 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 HMGB3P31-201ENST00000413333 595 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AL050321.1-201ENST00000432363 400 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 RPS29P7-201ENST00000439662 171 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC092809.1-201ENST00000441469 474 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 EIF2S2P5-201ENST00000457635 968 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 DEFB109F-201ENST00000491870 277 ntBASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.28□□□□□ -1.72
HDDC3Q8N4P3 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms