Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RPL31P2-201ENST00000413849 377 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 ARL17B-201ENST00000434041 798 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 OR52B5P-201ENST00000435337 951 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 HMGB1P12-201ENST00000438594 598 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 ARL17A-203ENST00000445552 798 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC008264.1-201ENST00000447612 367 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 TPT1P12-201ENST00000448968 492 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC010655.1-201ENST00000449336 292 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC115115.1-201ENST00000449927 248 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 HMGN2P16-201ENST00000456802 261 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC023598.1-201ENST00000472521 361 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC090114.3-201ENST00000479267 829 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AP001781.1-201ENST00000530977 207 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC063949.1-201ENST00000552900 865 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 NF1P5-201ENST00000588287 448 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AL512782.1-201ENST00000603093 364 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC087763.1-201ENST00000603391 286 ntBASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.13□□□□□ -2.07
LINC00643Q86TS7 AC007656.2-201ENST00000624902 4547 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 FAM91A3P-201ENST00000456826 2544 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 CD3D-202ENST00000392884 476 ntTSL 2 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AL645927.1-201ENST00000396783 406 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 RN7SKP229-201ENST00000410465 302 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 HSPE1P12-201ENST00000412576 301 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC005162.1-201ENST00000416513 389 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC011998.1-201ENST00000433403 117 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC064862.4-201ENST00000442180 334 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC069540.1-201ENST00000446320 988 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC093166.3-201ENST00000448785 303 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 TMEM246-AS1-204ENST00000450109 538 ntTSL 3 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 SSXP4-201ENST00000451349 245 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 OR52A4P-201ENST00000472867 958 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 APOPT1-206ENST00000476323 757 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 RPL35P6-201ENST00000490024 372 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 RN7SL101P-201ENST00000496350 279 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 MTND5P4-201ENST00000514978 288 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 RNA5SP49-201ENST00000516450 115 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 OR4A45P-201ENST00000529954 901 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 HSPE1P20-201ENST00000538133 289 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 LYZ-203ENST00000549690 669 ntTSL 2 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC053481.4-201ENST00000583164 216 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC093765.1-201ENST00000603758 881 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AL591034.3-201ENST00000605511 685 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 RPL23AP88-201ENST00000605759 454 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC023206.1-201ENST00000605824 298 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AL512413.1-201ENST00000606489 382 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 MIR7151-201ENST00000617477 60 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC079684.1-201ENST00000621405 437 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 AC092435.3-201ENST00000565538 3654 ntBASIC2.12□□□□□ -2.07
LINC00643Q86TS7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
LINC00643Q86TS7 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 AL157700.1-201ENST00000561973 1432 ntBASIC2.11□□□□□ -2.07
LINC00643Q86TS7 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
LINC00643Q86TS7 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms