Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AL133457.1-201ENST00000564251 987 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AC122134.1-201ENST00000565664 1104 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AC106782.4-201ENST00000568264 210 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AC015911.5-201ENST00000587076 451 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AL031985.2-201ENST00000600955 480 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AL442067.2-201ENST00000614033 363 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AL773545.4-201ENST00000637262 310 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AL513478.4-201ENST00000641636 310 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 ZNF833P-201ENST00000424938 1494 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AP002001.2-201ENST00000529025 1469 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHD3Q12873 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 OR52E6-202ENST00000379946 954 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 TANK-206ENST00000406287 875 ntTSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC3.31□□□□□ -1.88
CHD3Q12873 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 ELOCP18-201ENST00000434209 337 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 PDSS1P2-201ENST00000449397 678 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 EIF2S2P4-201ENST00000461070 984 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 RPL6P9-201ENST00000466502 859 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 RN7SL585P-201ENST00000470538 280 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC3.31□□□□□ -1.88
CHD3Q12873 AL133247.2-201ENST00000603236 482 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AC017076.1-201ENST00000607613 578 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 MIR8058-201ENST00000615737 89 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 AC243312.2-201ENST00000623340 601 ntBASIC3.31□□□□□ -1.88
CHD3Q12873 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
CHD3Q12873 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
CHD3Q12873 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.3□□□□□ -1.88
CHD3Q12873 AL355596.1-201ENST00000565399 3996 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 RHEBP3-201ENST00000411920 351 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC3.3□□□□□ -1.88
CHD3Q12873 FTH1P6-201ENST00000430768 320 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 AC236972.1-201ENST00000433225 199 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.3□□□□□ -1.88
CHD3Q12873 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC3.3□□□□□ -1.88
CHD3Q12873 NDUFS5P3-201ENST00000450668 321 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 UBE2DNL-203ENST00000474922 222 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 RN7SL293P-201ENST00000481765 281 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 RPL7P47-201ENST00000497299 556 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.3□□□□□ -1.88
CHD3Q12873 AC087369.1-201ENST00000520775 996 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC3.3□□□□□ -1.88
CHD3Q12873 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.3□□□□□ -1.88
CHD3Q12873 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.3□□□□□ -1.88
CHD3Q12873 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.3□□□□□ -1.88
CHD3Q12873 OR6R2P-201ENST00000609216 300 ntBASIC3.3□□□□□ -1.88
CHD3Q12873 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.3□□□□□ -1.88
CHD3Q12873 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC3.3□□□□□ -1.88
CHD3Q12873 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHD3Q12873 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
CHD3Q12873 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CHD3Q12873 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHD3Q12873 AL122016.1-201ENST00000403365 367 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 HSPD1P21-201ENST00000436541 245 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHD3Q12873 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.29□□□□□ -1.88
CHD3Q12873 AL049873.1-201ENST00000480540 376 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 FCF1P3-201ENST00000496394 590 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.29□□□□□ -1.88
CHD3Q12873 AC018442.3-201ENST00000523025 183 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.29□□□□□ -1.88
CHD3Q12873 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.29□□□□□ -1.88
CHD3Q12873 HSPE1P5-201ENST00000561489 272 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC3.29□□□□□ -1.88
CHD3Q12873 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
CHD3Q12873 MTND4P10-201ENST00000446199 1363 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHD3Q12873 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.29□□□□□ -1.88
CHD3Q12873 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.29□□□□□ -1.88
CHD3Q12873 UBE3AP2-201ENST00000429033 2259 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC3.29□□□□□ -1.88
CHD3Q12873 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
CHD3Q12873 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
CHD3Q12873 SNORA3.3-201ENST00000408712 125 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 ATP5HP2-201ENST00000433885 485 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 TPTE2P3-201ENST00000441562 1189 ntBASIC3.29□□□□□ -1.88
CHD3Q12873 AC099063.2-201ENST00000446360 662 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms