Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 PTS-202ENST00000524931 696 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 SLC2A13P1-201ENST00000531560 322 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 OR4A43P-201ENST00000532938 908 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC092490.3-201ENST00000545370 572 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 CR383658.2-201ENST00000547576 1525 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 HSPA8P14-201ENST00000552265 1805 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXD3P31249 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC068714.1-201ENST00000559623 800 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXD3P31249 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC011840.5-201ENST00000582125 771 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXD3P31249 MIR7853-201ENST00000584820 132 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC107982.3-201ENST00000584957 985 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC079089.3-201ENST00000603094 673 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC015871.2-201ENST00000603605 948 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC108738.1-201ENST00000603703 237 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 AC107214.2-201ENST00000608204 634 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 Z99129.1-201ENST00000612510 255 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC025594.3-201ENST00000613068 790 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC116447.1-201ENST00000613153 453 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC015540.1-201ENST00000615828 501 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 AC018755.4-201ENST00000619715 454 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 AC015908.5-201ENST00000623289 343 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC096656.1-201ENST00000623826 1364 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AL356596.1-201ENST00000624230 379 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC079228.1-201ENST00000624774 1049 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 AC006927.3-201ENST00000638789 384 ntBASIC4.08□□□□□ -1.76
HOXD3P31249 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXD3P31249 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXD3P31249 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.08□□□□□ -1.76
HOXD3P31249 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXD3P31249 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 CASC19-204ENST00000641001 2055 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD3P31249 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXD3P31249 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXD3P31249 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD3P31249 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 TCP11X1-202ENST00000622971 1372 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
HOXD3P31249 Y_RNA.25-201ENST00000362528 102 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNU6-115P-201ENST00000364310 107 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNA5SP88-201ENST00000365560 109 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNU6-657P-201ENST00000383904 107 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 SNORA56-201ENST00000383966 129 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 SNORA75-201ENST00000384158 137 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNU6-517P-201ENST00000384362 110 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNU6-1215P-201ENST00000384441 102 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 OR8V1P-201ENST00000395193 873 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AL109941.1-201ENST00000401925 229 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNU2-65P-201ENST00000410162 185 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RNU2-16P-201ENST00000410712 136 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 RPL23AP39-201ENST00000415533 405 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 OFD1P11Y-201ENST00000418213 1177 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC062016.2-201ENST00000420950 676 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 FABP7P2-201ENST00000429946 379 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AF212831.1-201ENST00000430064 377 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 MTND6P18-201ENST00000439477 513 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 ELOCP10-201ENST00000440624 327 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXD3P31249 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 H2AFZP6-201ENST00000444403 394 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 BMI1P1-201ENST00000445879 941 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 TPT1P7-201ENST00000458300 517 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC108161.1-201ENST00000461060 402 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 SRRM1P2-201ENST00000464531 1192 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 IGBP1P4-201ENST00000503202 879 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RPS4XP20-201ENST00000505751 772 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC010460.1-201ENST00000507087 466 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXD3P31249 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC009803.2-201ENST00000550378 665 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXD3P31249 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 CR383656.6-201ENST00000550518 394 ntBASIC4.07□□□□□ -1.76
HOXD3P31249 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXD3P31249 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms