Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 SNORA11C-201ENST00000408532 129 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 RPS12P23-201ENST00000419579 400 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 RGS17P1-201ENST00000423358 553 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC012497.1-201ENST00000429392 575 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AL096829.2-201ENST00000446582 742 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 BX248409.1-201ENST00000455497 255 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC112206.1-201ENST00000468416 477 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 RPL35P6-201ENST00000490024 372 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AL132838.2-201ENST00000492041 314 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC008885.2-201ENST00000509506 930 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC021851.1-201ENST00000608537 1082 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AL359535.1-201ENST00000612100 1087 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 SNX18P1Y-201ENST00000616231 511 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC004825.2-201ENST00000616634 455 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC112484.5-201ENST00000624189 228 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 MTCO1P14-201ENST00000441695 1559 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00622-201ENST00000562811 1570 ntBASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AL672167.1-205ENST00000641112 3080 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 LARP1BP1-201ENST00000506036 1359 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 MIR3065-201ENST00000390137 79 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 DNAJC19P6-201ENST00000401853 280 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC004448.2-201ENST00000422360 586 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC006994.1-201ENST00000438212 839 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC004938.1-201ENST00000438468 308 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 UBE2V1P5-201ENST00000440070 405 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AL929236.1-201ENST00000443622 518 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 MRPL48P1-201ENST00000445390 636 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC104651.2-201ENST00000447549 528 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 MRPL35P4-201ENST00000453682 566 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC133473.1-201ENST00000455173 299 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 SNORA67.7-201ENST00000516664 135 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ARL1-211ENST00000551828 776 ntTSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AL139286.1-201ENST00000604465 483 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AP003117.2-201ENST00000606010 545 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AL136370.1-201ENST00000608166 691 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AP005229.2-201ENST00000609980 697 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 MIR8069-1-201ENST00000616627 86 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AC006133.1-201ENST00000617106 264 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 MIR8069-2-201ENST00000621412 86 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 MIR4496-201ENST00000635896 61 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 FAM157B-203ENST00000639350 358 ntBASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.3□□□□□ -1.72
PCDHGA1Q9Y5H4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms