Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 EXTL2P1-201ENST00000446218 416 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 RN7SL354P-201ENST00000469282 294 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 USP9YP5-201ENST00000511770 630 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 MORF4L1P3-201ENST00000525966 950 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 MEG8-217ENST00000556637 924 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 MTCYBP28-201ENST00000566728 1132 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 RN7SL690P-201ENST00000582087 240 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AL009028.1-201ENST00000604895 802 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 Z98200.1-201ENST00000607298 470 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC233309.1-201ENST00000619522 751 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 MIR6853-201ENST00000619642 74 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 MIR4727-201ENST00000622232 55 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AF127577.6-201ENST00000623352 2191 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 AC000367.1-201ENST00000452711 1766 ntBASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
ZNF540Q8NDQ6 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 ZNF962P-201ENST00000443465 3140 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 DHX40P1-201ENST00000588725 1412 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RNA5SP191-201ENST00000362585 102 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RN7SKP267-201ENST00000410381 285 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 MTND2P16-201ENST00000419987 799 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC244098.2-201ENST00000422068 99 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC073310.1-201ENST00000423226 1033 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 YWHAEP5-201ENST00000431545 765 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 UBE2V1P5-201ENST00000440070 405 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC010733.1-201ENST00000451515 401 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AL035407.2-201ENST00000454090 378 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 MTND2P6-201ENST00000455337 1030 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RPL5P24-201ENST00000463742 885 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RPL21P104-201ENST00000464143 478 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC010307.1-201ENST00000467206 836 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SNRPGP3-201ENST00000469405 227 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC093267.1-201ENST00000489176 961 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AK3P4-201ENST00000504283 583 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC017037.1-201ENST00000508460 471 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC087241.1-201ENST00000508615 429 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RGS4-207ENST00000527809 817 ntTSL 4 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC073487.1-201ENST00000547009 529 ntTSL 4 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 RPL23AP97-201ENST00000568955 471 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 MIR4697-201ENST00000582977 78 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 MIR5096-201ENST00000583713 70 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 BPIFA4P-203ENST00000603168 689 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC098935.2-201ENST00000604222 466 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 IGHV3-29-201ENST00000604817 344 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 MIR432-201ENST00000606207 94 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC103858.2-201ENST00000621471 543 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC138907.10-201ENST00000623708 983 ntBASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 ARHGAP21-218ENST00000636789 4210 ntTSL 2 BASIC4.06□□□□□ -1.76
ZNF540Q8NDQ6 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RMDN2-204ENST00000406384 1932 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RNU6-543P-201ENST00000362576 108 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RNU6-1243P-201ENST00000364028 107 ntBASIC4.05□□□□□ -1.76
ZNF540Q8NDQ6 RNA5SP505-201ENST00000364748 108 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms