Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC000367.1-201ENST00000452711 1766 ntBASIC4.58□□□□□ -1.68
COL28A1Q2UY09 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.58□□□□□ -1.68
COL28A1Q2UY09 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 NCLP2-201ENST00000416078 1462 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 SMG1P6-201ENST00000532337 2930 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 MAPK10-320ENST00000641462 6696 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 SNORA73.1-201ENST00000363107 205 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RNU4-92P-201ENST00000363783 136 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RPL7AP25-201ENST00000423357 805 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RAC1P8-201ENST00000427086 527 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 EEF1A1P39-201ENST00000440791 250 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RHEBP2-201ENST00000450289 600 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 snoU13.24-201ENST00000458998 104 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RPL23AP56-201ENST00000460778 453 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RN7SL132P-201ENST00000478131 296 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RNU2-30P-201ENST00000516209 141 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RNU1-45P-201ENST00000517191 141 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 EEF1A1P37-201ENST00000522748 715 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AL442163.2-201ENST00000553912 710 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC044913.1-201ENST00000557200 430 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 MTATP6P24-201ENST00000576835 677 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 MIR3944-201ENST00000581277 108 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AC114781.5-201ENST00000615297 108 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 RNA5SP196-201ENST00000625967 102 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 UGP2-231ENST00000627474 264 ntTSL 5 BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 AL355852.1-201ENST00000454081 1771 ntBASIC4.57□□□□□ -1.68
COL28A1Q2UY09 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
COL28A1Q2UY09 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC005261.4-201ENST00000600047 1385 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 TAS2R19-201ENST00000390673 1002 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 RNA5SP397-201ENST00000391323 118 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 ATP5F1P2-201ENST00000398143 760 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 LRRC37BP1-201ENST00000398851 714 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 TRAPPC2P10-201ENST00000415662 323 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC013429.2-201ENST00000418798 781 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 XKRYP1-201ENST00000423438 492 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 XKRYP2-201ENST00000432915 492 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 RPS26P40-201ENST00000435209 294 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 NANOGP2-201ENST00000435391 727 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AL450023.3-201ENST00000440592 271 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 CR769776.1-201ENST00000441254 787 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AL162591.2-201ENST00000449634 317 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC098826.2-201ENST00000452011 651 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AL691482.1-201ENST00000453255 87 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 MTCO3P35-201ENST00000485582 781 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC113347.3-201ENST00000509113 148 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC006499.6-201ENST00000511169 607 ntBASIC4.56□□□□□ -1.68
COL28A1Q2UY09 AC024132.3-201ENST00000513616 649 ntTSL 5 BASIC4.56□□□□□ -1.68
COL28A1Q2UY09 Y_RNA.717-201ENST00000517106 92 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms