Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC026333.2-201ENST00000542164 106 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 OR8R1P-201ENST00000543943 764 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.46□□□□□ -1.86
FOXA1P55317 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA1P55317 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.46□□□□□ -1.86
FOXA1P55317 AGGF1P6-201ENST00000569213 976 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 ADAM3B-201ENST00000569937 840 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC3.46□□□□□ -1.86
FOXA1P55317 MIR4425-201ENST00000580572 84 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AC093330.1-201ENST00000583326 568 ntTSL 4 BASIC3.46□□□□□ -1.86
FOXA1P55317 BNIP3P38-201ENST00000601117 544 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA1P55317 AC010857.1-201ENST00000606398 594 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 AL159169.2-201ENST00000610061 1269 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 RMST_8.1-201ENST00000610287 165 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA1P55317 CCT7-217ENST00000626868 249 ntTSL 5 BASIC3.46□□□□□ -1.86
FOXA1P55317 AC106871.1-201ENST00000568324 3102 ntBASIC3.46□□□□□ -1.86
FOXA1P55317 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.46□□□□□ -1.86
FOXA1P55317 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 OR4A15-201ENST00000314706 1035 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 MIR30E-201ENST00000362104 92 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 MIR365B-201ENST00000362317 111 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 U8.11-201ENST00000384699 133 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 U8.12-201ENST00000384701 133 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 RPL32P23-201ENST00000397237 405 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 RN7SKP156-201ENST00000410308 342 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 RNU6-628P-201ENST00000410675 107 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.45□□□□□ -1.86
FOXA1P55317 DBIP2-201ENST00000419076 262 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA1P55317 NDUFS5P3-201ENST00000450668 321 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 U8.18-201ENST00000459285 133 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AC004801.2-202ENST00000463559 283 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA1P55317 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA1P55317 SNORA70.18-201ENST00000516696 98 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA1P55317 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA1P55317 RFPL1S-203ENST00000539579 330 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AC135001.1-201ENST00000544546 283 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.45□□□□□ -1.86
FOXA1P55317 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC3.45□□□□□ -1.86
FOXA1P55317 MIR4286-201ENST00000580651 93 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 AL020997.2-201ENST00000602607 184 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 AL365503.1-201ENST00000605247 905 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 OR6R2P-201ENST00000609216 300 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXA1P55317 ASNSP1-204ENST00000641977 1664 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 TNPO1P3-201ENST00000436471 2662 ntBASIC3.45□□□□□ -1.86
FOXA1P55317 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXA1P55317 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
FOXA1P55317 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
FOXA1P55317 AC007823.1-201ENST00000569932 1566 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 TAS2R3-201ENST00000247879 1101 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
FOXA1P55317 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
FOXA1P55317 Y_RNA.126-201ENST00000363382 111 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 RNA5SP515-201ENST00000364570 118 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.44□□□□□ -1.86
FOXA1P55317 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.44□□□□□ -1.86
FOXA1P55317 AP002088.1-201ENST00000382740 395 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 SNORD3H-201ENST00000384486 214 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 HMGB3P18-201ENST00000406327 590 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 RN7SKP53-201ENST00000411337 315 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC096644.3-201ENST00000416788 338 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC068533.1-201ENST00000418542 415 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 MTCYBP21-201ENST00000443300 1113 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXA1P55317 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA1P55317 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXA1P55317 ARL2BPP6-201ENST00000512757 439 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 RN7SKP141-201ENST00000516167 338 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.44□□□□□ -1.86
FOXA1P55317 DUXAP6-201ENST00000553858 601 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC068446.3-201ENST00000555285 382 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 TGIF1P1-201ENST00000558095 802 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC009558.2-201ENST00000558258 396 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXA1P55317 HSPE1P5-201ENST00000561489 272 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 BNIP3P5-201ENST00000562290 498 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC007224.1-201ENST00000564410 144 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA1P55317 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 AL034351.1-201ENST00000605288 668 ntBASIC3.44□□□□□ -1.86
FOXA1P55317 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXA1P55317 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXA1P55317 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXA1P55317 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
FOXA1P55317 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms