Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.14□□□□□ -1.75
TNFRSF4P43489 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 RNA5SP27-201ENST00000363839 119 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 MIR200C-201ENST00000384980 68 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC008173.1-201ENST00000418901 264 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 ELOCP11-201ENST00000436690 332 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AP000949.1-201ENST00000438328 629 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 RPL23AP89-201ENST00000439324 255 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 ELOCP16-201ENST00000444494 332 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AL035407.2-201ENST00000454090 378 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 EIF2S2P5-201ENST00000457635 968 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 RPS4XP12-201ENST00000461747 709 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC091564.1-201ENST00000464563 479 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 RPL29P14-201ENST00000495837 428 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AL035404.1-201ENST00000497982 568 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AP000777.1-201ENST00000541495 355 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 PDCD5P1-201ENST00000543528 309 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC009852.2-201ENST00000567898 485 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 MTND4LP25-201ENST00000570218 163 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC025627.2-201ENST00000576220 160 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AP005262.1-201ENST00000582646 997 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AL158211.2-201ENST00000607282 395 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 AC245100.7-201ENST00000609678 442 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 MIR6868-201ENST00000611215 58 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 MIR8084-201ENST00000614105 89 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 MIR6075-201ENST00000620782 95 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AP005264.7-201ENST00000625003 745 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 Z82217.1-201ENST00000625157 8149 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 SEC63P2-201ENST00000503863 1939 ntBASIC4.14□□□□□ -1.75
TNFRSF4P43489 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
TNFRSF4P43489 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
TNFRSF4P43489 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
TNFRSF4P43489 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
TNFRSF4P43489 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TNFRSF4P43489 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TNFRSF4P43489 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TNFRSF4P43489 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TNFRSF4P43489 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 RNU1-15P-201ENST00000353977 144 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 SNORD56.4-201ENST00000363883 71 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 MIR670-201ENST00000390142 98 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 MIR1271-201ENST00000408537 86 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC073310.1-201ENST00000423226 1033 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC018644.1-201ENST00000429934 551 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AL358472.1-201ENST00000431295 329 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 MTCO1P43-201ENST00000431831 488 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 RPS7P5-201ENST00000441482 581 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 HMGB3P9-201ENST00000441799 583 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC068135.1-201ENST00000446164 246 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 ZNF736P6Y-201ENST00000447526 1213 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC034236.1-201ENST00000469891 373 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC022034.3-201ENST00000471393 478 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 RPL21P47-201ENST00000483696 477 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 RPL30P11-201ENST00000495304 339 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 MTCO2P9-201ENST00000503214 694 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC008562.1-201ENST00000521763 330 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 LSM3P2-201ENST00000551246 273 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC4.13□□□□□ -1.75
TNFRSF4P43489 HNRNPCP4-201ENST00000571636 900 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 MIR4472-2-201ENST00000582069 67 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 SLC25A36P1-201ENST00000590111 465 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC112230.1-201ENST00000604342 547 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AL008729.2-201ENST00000606393 473 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 SNORD91B-202ENST00000608459 222 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AL133445.2-201ENST00000611191 527 ntBASIC4.13□□□□□ -1.75
TNFRSF4P43489 AC073569.3-201ENST00000619055 682 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 165.9 ms