Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC090079.2-201ENST00000575289 768 ntBASIC3.82□□□□□ -1.8
SDC1P18827 IPO5P1-202ENST00000600039 287 ntBASIC3.82□□□□□ -1.8
SDC1P18827 AP003117.1-201ENST00000602771 554 ntBASIC3.82□□□□□ -1.8
SDC1P18827 MRPS35P3-201ENST00000603189 709 ntBASIC3.82□□□□□ -1.8
SDC1P18827 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC1P18827 AL355816.1-201ENST00000607951 118 ntBASIC3.82□□□□□ -1.8
SDC1P18827 AC004948.1-201ENST00000609858 672 ntBASIC3.82□□□□□ -1.8
SDC1P18827 VN1R9P-201ENST00000614184 867 ntBASIC3.82□□□□□ -1.8
SDC1P18827 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SDC1P18827 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC1P18827 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
SDC1P18827 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC3.82□□□□□ -1.8
SDC1P18827 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
SDC1P18827 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.82□□□□□ -1.8
SDC1P18827 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 AL353743.4-201ENST00000422653 1547 ntBASIC3.81□□□□□ -1.8
SDC1P18827 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 UBE3AP2-201ENST00000429033 2259 ntBASIC3.81□□□□□ -1.8
SDC1P18827 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 MTND4P31-201ENST00000425607 1343 ntBASIC3.81□□□□□ -1.8
SDC1P18827 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SDC1P18827 AL590290.1-201ENST00000405336 380 ntBASIC3.81□□□□□ -1.8
SDC1P18827 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 TPT1P2-201ENST00000413105 503 ntBASIC3.81□□□□□ -1.8
SDC1P18827 RPL23AP38-201ENST00000423801 469 ntBASIC3.81□□□□□ -1.8
SDC1P18827 TCEAL3-AS1-201ENST00000424887 361 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 OR5BE1P-201ENST00000425977 939 ntBASIC3.81□□□□□ -1.8
SDC1P18827 DNAJC19P7-201ENST00000428811 344 ntBASIC3.81□□□□□ -1.8
SDC1P18827 ETF1P3-201ENST00000430422 1160 ntBASIC3.81□□□□□ -1.8
SDC1P18827 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.81□□□□□ -1.8
SDC1P18827 KCTD9P3-201ENST00000434597 1169 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 AC239809.1-201ENST00000450470 217 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 RPL23AP71-201ENST00000470966 469 ntBASIC3.81□□□□□ -1.8
SDC1P18827 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 RPL7P24-201ENST00000493052 752 ntBASIC3.81□□□□□ -1.8
SDC1P18827 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 AC097372.3-201ENST00000503593 522 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 AC026726.1-201ENST00000512859 601 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 HMGN1P15-201ENST00000513870 295 ntBASIC3.81□□□□□ -1.8
SDC1P18827 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 C1DP5-201ENST00000525775 383 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AC009643.1-201ENST00000532030 391 ntBASIC3.81□□□□□ -1.8
SDC1P18827 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 AL360157.1-201ENST00000565962 87 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.81□□□□□ -1.8
SDC1P18827 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 BNIP3P19-201ENST00000605397 577 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 AL591424.2-201ENST00000617023 128 ntBASIC3.81□□□□□ -1.8
SDC1P18827 FRG1HP-204ENST00000617940 757 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AC253576.2-201ENST00000618815 580 ntBASIC3.81□□□□□ -1.8
SDC1P18827 CR392039.4-201ENST00000624968 501 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 OR5BE1P-202ENST00000641168 1176 ntBASIC3.81□□□□□ -1.8
SDC1P18827 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
SDC1P18827 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 USP9YP4-201ENST00000424401 1745 ntBASIC3.81□□□□□ -1.8
SDC1P18827 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC1P18827 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
SDC1P18827 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
SDC1P18827 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SDC1P18827 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC3.8□□□□□ -1.8
SDC1P18827 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 CYP1D1P-201ENST00000416662 1433 ntBASIC3.8□□□□□ -1.8
SDC1P18827 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
SDC1P18827 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 AC005261.4-201ENST00000600047 1385 ntBASIC3.8□□□□□ -1.8
SDC1P18827 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.8□□□□□ -1.8
SDC1P18827 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 RNU6-984P-201ENST00000363236 109 ntBASIC3.8□□□□□ -1.8
SDC1P18827 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
SDC1P18827 RNU6-146P-201ENST00000384602 108 ntBASIC3.8□□□□□ -1.8
SDC1P18827 RPL31P52-201ENST00000407532 367 ntBASIC3.8□□□□□ -1.8
SDC1P18827 AC008173.1-201ENST00000418901 264 ntBASIC3.8□□□□□ -1.8
SDC1P18827 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.8□□□□□ -1.8
SDC1P18827 COX6CP15-201ENST00000426313 211 ntBASIC3.8□□□□□ -1.8
SDC1P18827 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC3.8□□□□□ -1.8
SDC1P18827 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC3.8□□□□□ -1.8
SDC1P18827 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.8□□□□□ -1.8
SDC1P18827 ATP5HP2-201ENST00000433885 485 ntBASIC3.8□□□□□ -1.8
SDC1P18827 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 93.4 ms