Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.91□□□□□ -1.78
LSM1O15116 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC3.91□□□□□ -1.78
LSM1O15116 MIR5684-201ENST00000585074 65 ntBASIC3.91□□□□□ -1.78
LSM1O15116 AP001542.1-201ENST00000591314 200 ntBASIC3.91□□□□□ -1.78
LSM1O15116 AL133247.2-201ENST00000603236 482 ntBASIC3.91□□□□□ -1.78
LSM1O15116 AC115621.1-201ENST00000604653 858 ntBASIC3.91□□□□□ -1.78
LSM1O15116 AL451044.1-201ENST00000604867 238 ntBASIC3.91□□□□□ -1.78
LSM1O15116 LINC00216-201ENST00000623548 1126 ntBASIC3.91□□□□□ -1.78
LSM1O15116 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC3.91□□□□□ -1.78
LSM1O15116 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
LSM1O15116 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
LSM1O15116 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
LSM1O15116 AC139713.2-214ENST00000642059 1811 ntBASIC3.91□□□□□ -1.78
LSM1O15116 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
LSM1O15116 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
LSM1O15116 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.9□□□□□ -1.78
LSM1O15116 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
LSM1O15116 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
LSM1O15116 OR11H4-201ENST00000315409 1082 ntBASIC3.9□□□□□ -1.79
LSM1O15116 OR4K17-201ENST00000315543 1032 ntBASIC3.9□□□□□ -1.79
LSM1O15116 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.9□□□□□ -1.79
LSM1O15116 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC3.9□□□□□ -1.79
LSM1O15116 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 CHIAP3-201ENST00000423668 1133 ntBASIC3.9□□□□□ -1.79
LSM1O15116 AL031736.2-201ENST00000426573 787 ntBASIC3.9□□□□□ -1.79
LSM1O15116 AC087650.1-201ENST00000431445 468 ntBASIC3.9□□□□□ -1.79
LSM1O15116 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC3.9□□□□□ -1.79
LSM1O15116 TRAPPC13P1-201ENST00000435991 1062 ntBASIC3.9□□□□□ -1.79
LSM1O15116 ACTR3P2-201ENST00000439585 1257 ntBASIC3.9□□□□□ -1.79
LSM1O15116 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.9□□□□□ -1.79
LSM1O15116 snoU13.1-201ENST00000459157 104 ntBASIC3.9□□□□□ -1.79
LSM1O15116 RPL7P1-201ENST00000468161 747 ntBASIC3.9□□□□□ -1.79
LSM1O15116 RPL7P9-201ENST00000468715 747 ntBASIC3.9□□□□□ -1.79
LSM1O15116 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC3.9□□□□□ -1.79
LSM1O15116 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.9□□□□□ -1.79
LSM1O15116 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.9□□□□□ -1.79
LSM1O15116 Vault.1-201ENST00000516474 102 ntBASIC3.9□□□□□ -1.79
LSM1O15116 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC3.9□□□□□ -1.79
LSM1O15116 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.9□□□□□ -1.79
LSM1O15116 AC010601.1-202ENST00000567304 547 ntTSL 4 BASIC3.9□□□□□ -1.79
LSM1O15116 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.9□□□□□ -1.79
LSM1O15116 AC006557.3-201ENST00000592926 517 ntTSL 3 BASIC3.9□□□□□ -1.79
LSM1O15116 AC234771.5-201ENST00000600161 514 ntBASIC3.9□□□□□ -1.79
LSM1O15116 AP003392.5-201ENST00000607857 415 ntBASIC3.9□□□□□ -1.79
LSM1O15116 LGI1-209ENST00000627699 664 ntTSL 3 BASIC3.9□□□□□ -1.79
LSM1O15116 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC3.9□□□□□ -1.79
LSM1O15116 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
LSM1O15116 BDP1P-201ENST00000582658 1990 ntBASIC3.9□□□□□ -1.79
LSM1O15116 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.9□□□□□ -1.79
LSM1O15116 AC024560.2-201ENST00000507981 1497 ntBASIC3.9□□□□□ -1.79
LSM1O15116 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC3.9□□□□□ -1.79
LSM1O15116 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
LSM1O15116 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
LSM1O15116 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 GTF2H2B-203ENST00000508065 1432 ntBASIC3.89□□□□□ -1.79
LSM1O15116 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 SNORD35B-201ENST00000363660 87 ntBASIC3.89□□□□□ -1.79
LSM1O15116 RNA5SP509-201ENST00000364577 119 ntBASIC3.89□□□□□ -1.79
LSM1O15116 RNA5SP366-201ENST00000365454 123 ntBASIC3.89□□□□□ -1.79
LSM1O15116 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC3.89□□□□□ -1.79
LSM1O15116 Z86062.1-201ENST00000406773 777 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AL035696.2-201ENST00000407941 709 ntBASIC3.89□□□□□ -1.79
LSM1O15116 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC3.89□□□□□ -1.79
LSM1O15116 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC3.89□□□□□ -1.79
LSM1O15116 ELOCP11-201ENST00000436690 332 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.89□□□□□ -1.79
LSM1O15116 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
LSM1O15116 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC3.89□□□□□ -1.79
LSM1O15116 ELOCP16-201ENST00000444494 332 ntBASIC3.89□□□□□ -1.79
LSM1O15116 NDUFA12P1-201ENST00000455914 406 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.89□□□□□ -1.79
LSM1O15116 AC011276.1-201ENST00000469688 323 ntBASIC3.89□□□□□ -1.79
LSM1O15116 RPS29P22-201ENST00000472363 168 ntBASIC3.89□□□□□ -1.79
LSM1O15116 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC3.89□□□□□ -1.79
LSM1O15116 RNU6-889P-201ENST00000517189 103 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC3.89□□□□□ -1.79
LSM1O15116 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.89□□□□□ -1.79
LSM1O15116 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC3.89□□□□□ -1.79
LSM1O15116 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC3.89□□□□□ -1.79
LSM1O15116 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC3.89□□□□□ -1.79
LSM1O15116 PSMB7P1-201ENST00000556349 514 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.89□□□□□ -1.79
LSM1O15116 AC245128.3-201ENST00000594721 748 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AC006254.3-201ENST00000603353 884 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AL356218.2-201ENST00000605264 187 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AP003117.2-201ENST00000606010 545 ntBASIC3.89□□□□□ -1.79
LSM1O15116 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.89□□□□□ -1.79
LSM1O15116 AP000346.3-201ENST00000622821 210 ntBASIC3.89□□□□□ -1.79
LSM1O15116 AC073342.3-201ENST00000624211 193 ntBASIC3.89□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms