Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
USP29Q9HBJ7 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 RNF6P1-201ENST00000444889 1784 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 CYCSP10-201ENST00000417973 294 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC092017.2-201ENST00000427600 362 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 MTCO1P3-201ENST00000429327 192 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 RPS17P8-201ENST00000434525 335 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 RPL23AP76-201ENST00000441860 458 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AL451164.2-201ENST00000445932 597 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 MTND1P29-201ENST00000448112 647 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 ANKRD62P1-PARP4P3-201ENST00000456726 1181 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC010789.1-201ENST00000458489 291 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 RN7SL481P-201ENST00000477764 299 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 RPL7AP10-201ENST00000481016 791 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 OR5H4P-201ENST00000510851 923 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 LINC02241-202ENST00000512688 467 ntTSL 3 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC089983.1-201ENST00000549807 701 ntTSL 3 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 MTCYBP33-201ENST00000575007 1130 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AL391358.1-201ENST00000605342 190 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC023813.4-201ENST00000607580 580 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 SNORD91B-202ENST00000608459 222 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 uc_338.18-201ENST00000615451 175 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 CR381572.2-201ENST00000624852 397 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AL049737.1-201ENST00000413920 1403 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 AC099654.2-201ENST00000433031 1980 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 IRF5P1-201ENST00000504852 2164 ntBASIC4.94□□□□□ -1.62
USP29Q9HBJ7 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.94□□□□□ -1.62
USP29Q9HBJ7 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 TLK1P1-201ENST00000456760 2440 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 RPS16P5-201ENST00000406501 404 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 TRGV6-201ENST00000417928 299 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC114814.2-201ENST00000419195 485 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 PAICSP7-201ENST00000419829 962 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC006960.1-201ENST00000419980 153 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 RPL7P57-201ENST00000423238 740 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 MTND4P20-201ENST00000424125 869 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AL593851.1-201ENST00000426171 157 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 FHP1-201ENST00000442741 703 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC011753.3-201ENST00000443436 406 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 OR52J1P-201ENST00000450596 932 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC073387.1-201ENST00000453261 709 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 BX248409.1-201ENST00000455497 255 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC006967.1-201ENST00000467608 589 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC091435.1-201ENST00000505442 584 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 RFPL4AP5-201ENST00000514977 504 ntBASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC4.93□□□□□ -1.62
USP29Q9HBJ7 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms