Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC239367.2-201ENST00000447309 705 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 AC013267.1-201ENST00000458227 267 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC018638.3-201ENST00000461273 132 ntBASIC5.14□□□□□ -1.59
MSX2P35548 RN7SL273P-201ENST00000481561 299 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC104687.1-201ENST00000485829 412 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 RPL7L1P13-201ENST00000511702 739 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX2P35548 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 AC006960.3-201ENST00000561845 705 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.14□□□□□ -1.59
MSX2P35548 AP001004.1-201ENST00000582468 324 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC090236.2-201ENST00000587933 1101 ntBASIC5.14□□□□□ -1.59
MSX2P35548 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC5.14□□□□□ -1.59
MSX2P35548 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.14□□□□□ -1.59
MSX2P35548 AC079315.1-201ENST00000602952 623 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC009994.1-201ENST00000606889 253 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC023813.4-201ENST00000607580 580 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC092954.2-201ENST00000609103 430 ntBASIC5.14□□□□□ -1.59
MSX2P35548 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC5.14□□□□□ -1.59
MSX2P35548 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC5.14□□□□□ -1.59
MSX2P35548 MIR6793-201ENST00000612376 63 ntBASIC5.14□□□□□ -1.59
MSX2P35548 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AC138649.3-201ENST00000622154 254 ntBASIC5.14□□□□□ -1.59
MSX2P35548 AP001052.1-201ENST00000626421 99 ntBASIC5.14□□□□□ -1.59
MSX2P35548 LINC00969-332ENST00000630874 738 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 AL672167.1-204ENST00000641875 3017 ntBASIC5.14□□□□□ -1.59
MSX2P35548 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.14□□□□□ -1.59
MSX2P35548 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
MSX2P35548 AC093225.1-201ENST00000506867 1408 ntBASIC5.14□□□□□ -1.59
MSX2P35548 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.14□□□□□ -1.59
MSX2P35548 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 ARHGAP42P1-201ENST00000507474 1976 ntBASIC5.13□□□□□ -1.59
MSX2P35548 SMG1P4-204ENST00000523028 4131 ntBASIC5.13□□□□□ -1.59
MSX2P35548 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 SNORA64.1-201ENST00000362600 132 ntBASIC5.13□□□□□ -1.59
MSX2P35548 RN7SKP16-201ENST00000410180 299 ntBASIC5.13□□□□□ -1.59
MSX2P35548 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 OR51A5P-201ENST00000415429 942 ntBASIC5.13□□□□□ -1.59
MSX2P35548 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 AL121878.1-201ENST00000418638 859 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 OFD1P18Y-201ENST00000420889 959 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AL389915.1-201ENST00000422463 466 ntBASIC5.13□□□□□ -1.59
MSX2P35548 SKP1P3-201ENST00000429280 487 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 FMO7P-201ENST00000436045 768 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC012512.1-201ENST00000446594 718 ntBASIC5.13□□□□□ -1.59
MSX2P35548 RPL7P31-201ENST00000450192 724 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC144530.1-201ENST00000452862 555 ntBASIC5.13□□□□□ -1.59
MSX2P35548 TRBV8-2-201ENST00000475637 270 ntBASIC5.13□□□□□ -1.59
MSX2P35548 RPL21P6-201ENST00000479171 504 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AHI1-208ENST00000488690 712 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 RPL7P24-201ENST00000493052 752 ntBASIC5.13□□□□□ -1.59
MSX2P35548 RN7SL362P-201ENST00000494228 267 ntBASIC5.13□□□□□ -1.59
MSX2P35548 OR5H5P-201ENST00000503164 928 ntBASIC5.13□□□□□ -1.59
MSX2P35548 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 AC111193.1-201ENST00000504097 155 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.13□□□□□ -1.59
MSX2P35548 AP002748.2-201ENST00000528671 348 ntBASIC5.13□□□□□ -1.59
MSX2P35548 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 OLR1-209ENST00000543993 822 ntTSL 2 BASIC5.13□□□□□ -1.59
MSX2P35548 NANOGNBP2-201ENST00000544753 553 ntBASIC5.13□□□□□ -1.59
MSX2P35548 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
MSX2P35548 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 ANP32BP3-201ENST00000559213 706 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 UBE2FP2-201ENST00000566646 462 ntBASIC5.13□□□□□ -1.59
MSX2P35548 MYLK-221ENST00000583087 678 ntTSL 4 BASIC5.13□□□□□ -1.59
MSX2P35548 KPNA2P3-201ENST00000584190 848 ntBASIC5.13□□□□□ -1.59
MSX2P35548 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC5.13□□□□□ -1.59
MSX2P35548 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.13□□□□□ -1.59
MSX2P35548 AC124916.2-201ENST00000604416 224 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms