Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL592293.2-201ENST00000422292 996 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC068287.1-201ENST00000430283 295 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC087650.1-201ENST00000431445 468 ntBASIC3.85□□□□□ -1.79
SDC1P18827 RPS20P1-201ENST00000434853 354 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC1P18827 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 AC064871.1-201ENST00000444562 427 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC1P18827 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 RPL7P55-201ENST00000450522 746 ntBASIC3.85□□□□□ -1.79
SDC1P18827 RN7SL738P-201ENST00000470264 297 ntBASIC3.85□□□□□ -1.79
SDC1P18827 RN7SL459P-201ENST00000481078 302 ntBASIC3.85□□□□□ -1.79
SDC1P18827 RN7SL271P-201ENST00000487601 295 ntBASIC3.85□□□□□ -1.79
SDC1P18827 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
SDC1P18827 AC109458.1-201ENST00000508858 316 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC1P18827 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 AC093840.1-201ENST00000511599 336 ntBASIC3.85□□□□□ -1.79
SDC1P18827 NDUFB4P12-201ENST00000513465 390 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC1P18827 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC1P18827 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC3.85□□□□□ -1.79
SDC1P18827 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC3.85□□□□□ -1.79
SDC1P18827 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SDC1P18827 AP000916.1-201ENST00000533869 835 ntBASIC3.85□□□□□ -1.79
SDC1P18827 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC1P18827 POLR2KP1-201ENST00000553226 168 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC068446.3-201ENST00000555285 382 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC3.85□□□□□ -1.79
SDC1P18827 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC3.85□□□□□ -1.79
SDC1P18827 AC025627.2-201ENST00000576220 160 ntBASIC3.85□□□□□ -1.79
SDC1P18827 MIR4330-201ENST00000579077 105 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC110743.1-201ENST00000584870 478 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AL139286.1-201ENST00000604465 483 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.85□□□□□ -1.79
SDC1P18827 OR2BH1P-201ENST00000608850 864 ntBASIC3.85□□□□□ -1.79
SDC1P18827 AC078899.5-201ENST00000612475 178 ntBASIC3.85□□□□□ -1.79
SDC1P18827 RMST_10.1-201ENST00000616309 154 ntBASIC3.85□□□□□ -1.79
SDC1P18827 U6.48-201ENST00000618523 106 ntBASIC3.85□□□□□ -1.79
SDC1P18827 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SDC1P18827 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC3.85□□□□□ -1.79
SDC1P18827 AC103858.2-201ENST00000621471 543 ntBASIC3.85□□□□□ -1.79
SDC1P18827 MIR3653-201ENST00000625572 110 ntBASIC3.85□□□□□ -1.79
SDC1P18827 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 MFSD8-213ENST00000641134 1327 ntBASIC3.85□□□□□ -1.79
SDC1P18827 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 MTCO1P4-201ENST00000520516 1409 ntBASIC3.85□□□□□ -1.79
SDC1P18827 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SDC1P18827 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
SDC1P18827 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
SDC1P18827 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
SDC1P18827 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
SDC1P18827 BDP1P-201ENST00000582658 1990 ntBASIC3.84□□□□□ -1.79
SDC1P18827 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SDC1P18827 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SDC1P18827 SNORA60-201ENST00000362396 134 ntBASIC3.84□□□□□ -1.79
SDC1P18827 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
SDC1P18827 RNU11-4P-201ENST00000391149 133 ntBASIC3.84□□□□□ -1.79
SDC1P18827 UBE2V1P11-201ENST00000411559 285 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.84□□□□□ -1.79
SDC1P18827 AC245028.1-201ENST00000423259 256 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC3.84□□□□□ -1.79
SDC1P18827 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.84□□□□□ -1.79
SDC1P18827 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC3.84□□□□□ -1.79
SDC1P18827 AC096638.2-201ENST00000434965 711 ntBASIC3.84□□□□□ -1.79
SDC1P18827 RPL12P46-201ENST00000436610 195 ntBASIC3.84□□□□□ -1.79
SDC1P18827 EIF2S2P2-201ENST00000447161 982 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC3.84□□□□□ -1.79
SDC1P18827 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SDC1P18827 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC3.84□□□□□ -1.79
SDC1P18827 AL353148.1-203ENST00000452286 665 ntTSL 3 BASIC3.84□□□□□ -1.79
SDC1P18827 RPL38P1-201ENST00000460914 211 ntBASIC3.84□□□□□ -1.79
SDC1P18827 UQCRHP4-201ENST00000471686 272 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AL161747.1-201ENST00000480068 358 ntBASIC3.84□□□□□ -1.79
SDC1P18827 RPL21P47-201ENST00000483696 477 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AC091167.1-201ENST00000492017 396 ntBASIC3.84□□□□□ -1.79
SDC1P18827 RPS27AP13-201ENST00000498403 237 ntBASIC3.84□□□□□ -1.79
SDC1P18827 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
SDC1P18827 AC121161.1-201ENST00000510606 652 ntBASIC3.84□□□□□ -1.79
SDC1P18827 RNU6-334P-201ENST00000517072 102 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC3.84□□□□□ -1.79
SDC1P18827 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC3.84□□□□□ -1.79
SDC1P18827 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SDC1P18827 AC093510.2-201ENST00000562820 896 ntBASIC3.84□□□□□ -1.79
SDC1P18827 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.84□□□□□ -1.79
SDC1P18827 MIR4277-201ENST00000578298 84 ntBASIC3.84□□□□□ -1.79
SDC1P18827 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC3.84□□□□□ -1.79
SDC1P18827 AC115085.1-201ENST00000588924 229 ntBASIC3.84□□□□□ -1.79
SDC1P18827 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.84□□□□□ -1.79
SDC1P18827 AC008745.1-201ENST00000604064 271 ntBASIC3.84□□□□□ -1.79
SDC1P18827 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.84□□□□□ -1.79
SDC1P18827 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SDC1P18827 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.84□□□□□ -1.79
SDC1P18827 U6.107-201ENST00000637108 79 ntBASIC3.84□□□□□ -1.79
SDC1P18827 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SDC1P18827 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
SDC1P18827 IQCB2P-201ENST00000401788 1633 ntBASIC3.84□□□□□ -1.8
SDC1P18827 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
SDC1P18827 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms