Protein–RNA interactions for Protein: Q61371

Ift88, Intraflagellar transport protein 88 homolog, mousemouse

Predictions only

Length 824 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ift88Q61371 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ift88Q61371 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ift88Q61371 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ift88Q61371 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ift88Q61371 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Ift88Q61371 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
Ift88Q61371 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Ift88Q61371 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.33■□□□□ 0.52
Ift88Q61371 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.33■□□□□ 0.52
Ift88Q61371 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Ift88Q61371 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.33■□□□□ 0.52
Ift88Q61371 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
Ift88Q61371 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Trim28-201ENSMUST00000005705 3245 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.32■□□□□ 0.52
Ift88Q61371 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.32■□□□□ 0.52
Ift88Q61371 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Gm7791-201ENSMUST00000219066 539 ntBASIC18.32■□□□□ 0.52
Ift88Q61371 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC18.32■□□□□ 0.52
Ift88Q61371 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ift88Q61371 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Ift88Q61371 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ift88Q61371 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.31■□□□□ 0.52
Ift88Q61371 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
Ift88Q61371 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
Ift88Q61371 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ift88Q61371 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Mir1199-201ENSMUST00000117015 119 ntBASIC18.3■□□□□ 0.52
Ift88Q61371 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Ift88Q61371 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Gm43072-201ENSMUST00000200283 1671 ntBASIC18.3■□□□□ 0.52
Ift88Q61371 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Ift88Q61371 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 2210016F16Rik-201ENSMUST00000022032 3051 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ift88Q61371 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC18.29■□□□□ 0.52
Ift88Q61371 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.29■□□□□ 0.52
Ift88Q61371 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.29■□□□□ 0.52
Ift88Q61371 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.29■□□□□ 0.52
Ift88Q61371 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ift88Q61371 Sirt6-201ENSMUST00000042923 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ift88Q61371 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ift88Q61371 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms