Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC13.66□□□□□ -0.22
Sdc1P18828 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
Sdc1P18828 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC13.66□□□□□ -0.22
Sdc1P18828 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC13.66□□□□□ -0.22
Sdc1P18828 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Kcnt1-213ENSMUST00000198204 4714 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Sdc1P18828 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Fgf13-201ENSMUST00000033473 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Sptlc2-201ENSMUST00000021424 6710 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Sdc1P18828 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Sdc1P18828 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC13.65□□□□□ -0.22
Sdc1P18828 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Gm8493-201ENSMUST00000196881 489 ntBASIC13.65□□□□□ -0.22
Sdc1P18828 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC13.65□□□□□ -0.22
Sdc1P18828 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Sdc1P18828 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
Sdc1P18828 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC13.65□□□□□ -0.22
Sdc1P18828 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Sdc1P18828 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Sdc1P18828 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.23
Sdc1P18828 Gm10129-202ENSMUST00000193100 1316 ntBASIC13.64□□□□□ -0.23
Sdc1P18828 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC13.64□□□□□ -0.23
Sdc1P18828 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Nup98-205ENSMUST00000211022 3132 ntTSL 2 BASIC13.64□□□□□ -0.23
Sdc1P18828 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Tm9sf1-204ENSMUST00000121937 2398 ntTSL 5 BASIC13.64□□□□□ -0.23
Sdc1P18828 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Sdc1P18828 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC13.64□□□□□ -0.23
Sdc1P18828 Gm38285-201ENSMUST00000192928 922 ntBASIC13.64□□□□□ -0.23
Sdc1P18828 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Gbe1-203ENSMUST00000163832 2984 ntAPPRIS P5 TSL 5 BASIC13.64□□□□□ -0.23
Sdc1P18828 Sppl2b-201ENSMUST00000035597 2869 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Ptgs1-201ENSMUST00000062069 2867 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Sdc1P18828 Rnf14-203ENSMUST00000171461 3351 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
Sdc1P18828 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Gm16675-202ENSMUST00000208508 2586 ntTSL 2 BASIC13.63□□□□□ -0.23
Sdc1P18828 St8sia5-201ENSMUST00000075290 1841 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
Sdc1P18828 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
Sdc1P18828 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Rhot1-203ENSMUST00000077451 3297 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Sdc1P18828 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Usp43-201ENSMUST00000021288 4462 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Sdc1P18828 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Sdc1P18828 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Cep57-201ENSMUST00000034398 2523 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 St6gal2-201ENSMUST00000025000 6066 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Sdc1P18828 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC13.62□□□□□ -0.23
Sdc1P18828 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Sdc1P18828 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms